Moved User-Guide Info to WIKI

index.html

@@ -17,11 +17,11 @@
       <h1 class="project-name">The DIGS Tool</h1>
       <h2 class="project-tagline">Database-Integrated Genome Screening</h2>
 
-      <a href="./website/user-guide/explore.html" class="btn">Background</a>
-      <a href="./website/user-guide/user-guide.html" class="btn">Manual</a>
-       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
+      <a href="./website/explore.html" class="btn">Background</a>
+      <a href="https://github.com/giffordlabcvr/DIGS-tool/wiki" class="btn">User Guide</a>
+      <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
       <a target="_blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
-      <a href="./website/user-guide/publications.html" class="btn">Publications</a>
+      <a href="./website/publications.html" class="btn">Publications</a>
       <a target="_blank" href="https://twitter.com/DigsTool" class="btn">Twitter</a>
 
     </section>

website/user-guide/explore.html → website/explore.html

@@ -7,10 +7,10 @@
 	<meta charset="UTF-8">
 	<title>Exploring Genomes Using DIGS</title>
 	<meta name="viewport" content="width=device-width, initial-scale=1">
-	<link rel="stylesheet" type="text/css" href="../assets/stylesheets/normalize.css" media="screen">
+	<link rel="stylesheet" type="text/css" href="assets/stylesheets/normalize.css" media="screen">
 	<link href='https://fonts.googleapis.com/css?family=Open+Sans:400,700' rel='stylesheet' type='text/css'>
-	<link rel="stylesheet" type="text/css" href="../assets/stylesheets/stylesheet.css" media="screen">
-	<link rel="stylesheet" type="text/css" href="../assets/stylesheets/github-light.css" media="screen">
+	<link rel="stylesheet" type="text/css" href="assets/stylesheets/stylesheet.css" media="screen">
+	<link rel="stylesheet" type="text/css" href="assets/stylesheets/github-light.css" media="screen">
 
   </head>
 
@@ -25,7 +25,7 @@ <h2 class="project-tagline">Database-Integrated Genome Screening</h2>
 
 
       <a href="../../index.html" class="btn">Home</a>       
-      <a href="./user-guide.html" class="btn">Manual</a>
+      <a href="https://github.com/giffordlabcvr/DIGS-tool/wiki" class="btn">User Guide</a>
 
       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
       <a target="_blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
@@ -54,7 +54,7 @@ <h3>
 
 
 
-	<img src="../assets/images/terra-incognita.jpg" alt="Terra incognita"/>
+	<img src="assets/images/terra-incognita.jpg" alt="Terra incognita"/>
 	<br>
 
 	<br>
@@ -110,7 +110,7 @@ <h3>
 
 
 
-	<img src="../assets/images/bryce-erosion.jpg"alt="Bryce Canyon"/>
+	<img src="assets/images/bryce-erosion.jpg"alt="Bryce Canyon"/>
 
 <blockquote>
 	  <b>Bryce Canyon</b>: Geological structures show the impact of erosion over macroevolutionary time scales.	  
@@ -122,7 +122,7 @@ <h3>
     <br>
 
 
-		<img src="../assets/images/palimpsest.jpg"alt="Palimpsest"/>
+		<img src="assets/images/palimpsest.jpg"alt="Palimpsest"/>
 
 
 <blockquote>
@@ -160,7 +160,7 @@ <h3>
 
 	</p>
 
-	<img src="../assets/images/red-queen.jpg" alt="Alice and the Red Queen"/>
+	<img src="assets/images/red-queen.jpg" alt="Alice and the Red Queen"/>
 
 
 <blockquote>
@@ -187,7 +187,7 @@ <h3>
 
 
 
-	<img src="../assets/images/tangled-tree.jpg"alt="Tangled tree"/>
+	<img src="assets/images/tangled-tree.jpg"alt="Tangled tree"/>
 
 
 
@@ -223,7 +223,7 @@ <h3>
 	</p>
 	<br>
 
-    <img src="../assets/images/transposition.jpg"alt="Transposition and the embryo"/>
+    <img src="assets/images/transposition.jpg"alt="Transposition and the embryo"/>
 
 
 <blockquote>
@@ -291,7 +291,7 @@ <h3>
 
 
 <br>
-    <p><img src="../assets/images/terra-incognita-squares.jpg" alt="Here be dragons" /></p>
+    <p><img src="assets/images/terra-incognita-squares.jpg" alt="Here be dragons" /></p>
 
 
 <blockquote>
@@ -326,7 +326,7 @@ <h3>
 	</p>
 
 
-    <p><img src="../assets/images/hoskins.jpg" alt="Big data Hoskins" /></p>
+    <p><img src="assets/images/hoskins.jpg" alt="Big data Hoskins" /></p>
 
 
 

website/user-guide/publications.html → website/publications.html

@@ -7,10 +7,10 @@
 	<meta charset="UTF-8">
 	<title>DIGS Tool: Publications</title>
 	<meta name="viewport" content="width=device-width, initial-scale=1">
-	<link rel="stylesheet" type="text/css" href="../assets/stylesheets/normalize.css" media="screen">
+	<link rel="stylesheet" type="text/css" href="assets/stylesheets/normalize.css" media="screen">
 	<link href='https://fonts.googleapis.com/css?family=Open+Sans:400,700' rel='stylesheet' type='text/css'>
-	<link rel="stylesheet" type="text/css" href="../assets/stylesheets/stylesheet.css" media="screen">
-	<link rel="stylesheet" type="text/css" href="../assets/stylesheets/github-light.css" media="screen">
+	<link rel="stylesheet" type="text/css" href="assets/stylesheets/stylesheet.css" media="screen">
+	<link rel="stylesheet" type="text/css" href="assets/stylesheets/github-light.css" media="screen">
 
   </head>
 
@@ -24,9 +24,9 @@ <h1 class="project-name">The DIGS Tool</h1>
       <h2 class="project-tagline">Database-Integrated Genome Screening</h2>
 
 
-      <a href="../../index.html" class="btn">Home</a>       
+      <a href="../index.html" class="btn">Home</a>       
       <a href="./explore.html" class="btn">Background</a>
-      <a href="./user-guide.html" class="btn">Manual</a>
+      <a href="https://github.com/giffordlabcvr/DIGS-tool/wiki" class="btn">User Guide</a>
 
       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
       <a target="_blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>