Content update

giffordlabcvr · Nov 3, 2023 · e89edd2 · e89edd2
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Showing 6 changed files with 19 additions and 21 deletions.
diff --git a/index.html b/index.html
@@ -14,15 +14,15 @@
   <body>
     <section class="page-header">
 
-      <h1 class="project-name">DIGS</h1>
-      <h2 class="project-tagline">Database-Integrated Genome Screening</h2>
+      <h1 class="project-name">The DIGS Tool</h1>
+      <h2 class="project-tagline">A Software Framework for Database-Integrated Genome Screening (DIGS)</h2>
 
       <a href="./website/user-guide/explore.html" class="btn">Background</a>
       <a href="./website/user-guide/overview.html" class="btn">DIGS</a>
       <a href="./website/user-guide/user-guide.html" class="btn">Manual</a>
-      <a href="./website/user-guide/db-schema.html" class="btn">DB Schema</a>
       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
       <a target="_blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
+      <a target="blank" href="https://twitter.com/DigsTool" class="btn">Twitter</a>
 
     </section>
 

diff --git a/website/user-guide/explore.html b/website/user-guide/explore.html
@@ -27,9 +27,9 @@ <h2 class="project-tagline">Database-Integrated Genome Screening</h2>
       <a href="../../index.html" class="btn">Home</a>       
       <a href="./overview.html" class="btn">DIGS</a>
       <a href="./user-guide.html" class="btn">Manual</a>
-      <a href="./db-schema.html" class="btn">DB Schema</a>
       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
-      <a target="blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
+      <a target="_blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
+      <a target="_blank" href="https://twitter.com/DigsTool" class="btn">Twitter</a>
 
     </section>
 
@@ -403,22 +403,23 @@ <h3>
 
 
 		 Campbell M, Loncar S, Gifford RJ, Kotin R, and RJ Gifford
-		 <b>(2021)</b>
+		 <b>(2022)</b>
 		 <br>
 		 Comparative analysis reveals the long-term co-evolutionary history of parvoviruses and vertebrates.
 		 <br>
-		 <a href="https://www.biorxiv.org/content/10.1101/2021.10.25.465781v1">[preprint]</a> 
+		 <i>Plos Biology</i>
+		 <a href="https://doi.org/10.1371/journal.pbio.3001867" target="_blank">[view]</a> 
 		 <br>
 		 <br>
 
 
-
 		 Bamford CGG, de Souza WM, Parry R and RJ Gifford
-		 <b>(2021)</b>
+		 <b>(2022)</b>
 		 <br>
 		 Comparative analysis of genome-encoded viral sequences reveals the evolutionary history of the <i>Flaviviridae</i>.
-		 <br>
-		 <a href="https://www.biorxiv.org/content/10.1101/2021.09.19.460981v1" target="_blank">[preprint]</a> 
+         <br>
+		 <i>Virus Evolution</i>
+		 <a href="https://doi.org/10.1093/ve/veac085" target="_blank">[view]</a> 
 		 <br>
 		 <br>
 

diff --git a/website/user-guide/ncbi-taxonomy.html b/website/user-guide/ncbi-taxonomy.html
@@ -20,7 +20,8 @@ <h2 class="project-tagline">Explore genomes interactively using BLAST and a rela
       <a href="../index.html" class="btn">Home</a>
       <a href="https://github.com/giffordlabcvr/DIGS-tool/wiki/Installation-and-Setup" class="btn">User Guide</a>
       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
-      <a href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">View on GitHub</a>
+      <a target="_blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">View on GitHub</a>
+      <a target="_blank" href="https://twitter.com/DigsTool" class="btn">Twitter</a>
 
     </section>
 

diff --git a/website/user-guide/overview.html b/website/user-guide/overview.html
@@ -27,9 +27,9 @@ <h2 class="project-tagline">Database-Integrated Genome Screening</h2>
       <a href="../../index.html" class="btn">Home</a>
       <a href="./explore.html" class="btn">Background</a>
       <a href="./user-guide.html" class="btn">Manual</a>
-      <a href="./db-schema.html" class="btn">DB Schema</a>
       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
-      <a target="blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
+      <a target="_blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
+      <a target="_blank" href="https://twitter.com/DigsTool" class="btn">Twitter</a>
 
     </section>
 

diff --git a/website/user-guide/tutorial.html b/website/user-guide/tutorial.html
@@ -27,9 +27,9 @@ <h2 class="project-tagline">Database-Integrated Genome Screening</h2>
       <a href="../../index.html" class="btn">Home</a>       
       <a href="./overview.html" class="btn">DIGS</a>
       <a href="./user-guide.html" class="btn">Manual</a>
-      <a href="./db-schema.html" class="btn">DB Schema</a>
       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
-      <a target="blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
+      <a target="_blank"  href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
+      <a target="_blank" href="https://twitter.com/DigsTool" class="btn">Twitter</a>
 
     </section>
 

diff --git a/website/user-guide/user-guide.html b/website/user-guide/user-guide.html
@@ -19,14 +19,10 @@ <h2 class="project-tagline">Database-Integrated Genome Screening</h2>
 
       <a href="../../index.html" class="btn">Home</a>
       <a href="./explore.html" class="btn">Background</a>
-
       <a href="./overview.html" class="btn">DIGS</a>
-
-      <a href="./db-schema.html" class="btn">DB Schema</a>
-
-
       <a href="https://github.com/giffordlabcvr/DIGS-tool/zipball/master" class="btn">Download</a>
       <a target="_blank" href="https://github.com/giffordlabcvr/DIGS-tool" class="btn">GitHub</a>
+      <a target="_blank" href="https://twitter.com/DigsTool" class="btn">Twitter</a>
 
     </section>