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Sequence Data

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Robert J. Gifford edited this page Oct 17, 2024 · 1 revision

Flu-GLUE defines 'master' reference genomes for all infuenzavirus species and subtypes.

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Native Installation
  5. Docker Installation
  6. Usage

GLUE Concepts

  1. Project Data Model
  2. Command Layer
  3. Schema Extensions
  4. Modules
  5. Alignment Tree
  6. Variations
  7. Scripting Layer

Flu Core Project

  1. Overview
  2. Database Schema
  3. Genome Features
  4. Sequence Data
  5. Alignment Tree
  6. Phylogenetic Trees
  7. Segment Recognition
  8. Genotyping Tools

Expanding the Dataset

  1. Background
  2. Filtering
  3. Filtering Process

Usage

  1. Sequences
  2. Alignments
  3. Mutation Frequencies

Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference
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