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Removed EPV extension install instructions
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robjgiff committed May 27, 2024
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Expand Up @@ -325,32 +325,6 @@ <h3>
GLUE> run file buildGenusLevelProjects.glue</code></pre>

</p>


<p>
The <i>Parvoviridae</i> genus-level extension projects can be further extended to incorporate
EVE sequences by executing the commands in
<a href="https://github.com/giffordlabcvr/Parvovirus-GLUE/blob/master/buildGenusLevelPaleoProjects.glue"><b>this file</b></a>,
as follows.

<pre>
<code>Mode path: /
GLUE> run file buildGenusLevelPaleoProjects.glue</code></pre>

</p>

<p>
The <i>Parvoviridae</i> paleovirus extension incorporates a set of endogenous
viral elements (EVEs) recovered from the genomes of metazoan species. Building
the paleovirus extension allows automated alignment and phylogeny reconstruction
for individual EPV lineages in the project, following the classifications outlined in
<a target="blank" href="https://github.com/giffordlabcvr/Parvovirus-GLUE/blob/master/tabular/eve/"><b>these files</b></a>.
Individual EPV sequences have been classified into sets considered likely to
have arisen from the same germline colonisation event. Loci have been named using
a systematic approach (see
<a href="./website/html/paleoviruses.html"><b>here</b></a> for details).

</p>
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