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gh-358: add static types support#368

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paddyroddy merged 160 commits intomainglass-dev/glass:mainfrom paddy/issue-358glass-dev/glass:paddy/issue-358Copy head branch name to clipboardNov 7, 2024

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Commits on Oct 3, 2024

• gh-280: add mypy pre-commit hook

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• Add scientific Python recommended config

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• Ignore npt.NDArray without specified type

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Commits on Oct 4, 2024

• Merge branch 'main' into paddy/issue-280

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• Merge branch 'main' into paddy/issue-280

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• Add more ignore[type-arg]

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• Add None return type for tests

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• Add types from docstrings

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• Add rng type

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• Merge branch 'main' into paddy/issue-280

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• Add other rng

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Commits on Oct 7, 2024

• Switch from NDArray to ArrayLke

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• Add typing to array

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• Add types to user

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• Add points typing

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• Typing for shells

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• Add more typing

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• Turn off decorator warnings

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• Add return types

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• More typing

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Commits on Oct 8, 2024

• Run mypy_clean_slate

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• More fixing

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• mypy passes

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• Add space

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Commits on Oct 9, 2024

• Merge branch 'main' into paddy/issue-280

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• Fix mypy

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• Fix mypy

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• Fix linting

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• Separate out all typing imports

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• Using typing.Any throughout

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Commits on Oct 10, 2024

• Merge branch 'main' into paddy/issue-280

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Commits on Oct 14, 2024

• Merge branch 'main' into paddy/issue-280

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• Fix mypy

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Commits on Oct 15, 2024

• Merge branch 'main' into paddy/issue-280

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• Fix linting

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• Undo .gitignore

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• Fix mypy

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• Merge branch 'main' into paddy/issue-280

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• Fix merge

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• New line

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• Merge branch 'main' into paddy/issue-358

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• Fix formatting

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• Fix Returns in docstrings (I think entered in #357)

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• Switch numpy arrays to float/complex

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• Fix some more typing

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Commits on Oct 16, 2024

• Merge branch 'main' into paddy/issue-358

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• Remove some untyped-def

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• Add typing for redshifts_for_nz

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• positions_from_delta

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• catpos

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• Fix return-value

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• redundant-expr

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Commits on Oct 17, 2024

• Fix more typing

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• Add types to lists

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• Type count

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• ndinterp

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• Type z

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• Type triaxial_axis_ratio

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• Add more typing

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• Type ngal

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• Fix uniform_positions

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• var-annotated

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• Tidy catpos

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• Fix nz typing

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• Fix lower/upper

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• Fix wht

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• cmask and count

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• Type a

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• Type ellipticity_ryden04

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• Fix ellipticity_gaussian

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• ellipticity_intnorm

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• Sort deflect typing

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• Fix typing

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Commits on Oct 18, 2024

• Merge branch 'main' into paddy/issue-358

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• Fix arg-type

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• dtype

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• zsrc

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• Remove custom types

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• Remove collections.abc.Sequence

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• trapz_product

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• Switch to numpy empty

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• Add pytest_mock

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• Fix ext path

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• assert isinstance

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• More assert isinstance

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• Merge branch 'main' into paddy/issue-358

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• xm

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• Move _test_append into function

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• Fix typing of basic write

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• Fix results tuple

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Commits on Oct 21, 2024

• uniform_positions

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• Fix phz typing

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• Create conditional alpha function

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• Move attr-defined ignore nearer definition

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• Sort attr-defined

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• Disable warn_return_any

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Commits on Oct 22, 2024

• Fix unreachable code

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• List comprehension fixes assignment mypy

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• Fix notebook

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• Look at broadcast_leading_axes

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Commits on Oct 23, 2024

• Simplify redshifts_from_nz

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• Switch to arrays

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• Simplify more types

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• Remove double import

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• Fix tests

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• Remove float

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• Fix return value

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• Undo number

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• Fix broadcast_leading_axes

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Commits on Oct 24, 2024

• Fix the zsrc errors

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• Fix test

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• Fix fitsio import

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• Fix union-attr

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• Fix arg-type

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• Fix assignment

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• Fix test broadcast

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• Fix *rest

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• Fix assignment

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• Add typing metadata

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• bias can be array

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• Create bias_model_callable

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• Fix mypy

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• Add to git blame file

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• Ruff formating

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• Make size a tuple

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• Change extname

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• Fix ext

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• Change to np.sum

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• Merge branch 'main' into paddy/issue-358

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Commits on Oct 28, 2024

• Change from dtype to DTypeLike

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• Change to not

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• Merge branch 'main' into paddy/issue-358

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• Change from complex to float

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• Change RadialWindow to a Sequence

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• mu and sigma also floats

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• Fix return types

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• Change test to satisfy mypy

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• Fix write/load for None type

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• Restore int

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Commits on Oct 30, 2024

• Fix types based on NumPy v2

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• Disable ruff ANN rules

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• Disable more ANN rules in tests

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Commits on Nov 5, 2024

• Merge branch 'main' into paddy/issue-358

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• Merge branch 'main' into paddy/issue-358

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Commits on Nov 6, 2024

• Remove blame file

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• Turn off global warn_return_any setting

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• Merge branch 'main' into paddy/issue-358

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• Remove array part of floats

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• Explicitly convert to float

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• Restore ext is None

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• Return none to triaxial

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• Restore size

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• Restore WeightFunc

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• Restore ArrayLike1D

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• Restore Cls

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• Only run on glass

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