nCSTB

crispr motif search tool

coreScript expected output

{
    "out" : {
        "data" : [ HIT_ELEMENTS ],
        "not_in" : EXCLUDED_GENOMES_AS_STRING,
        "number_hits" : NUMBER_OF_MOTIFS,
        "tag"   : [FOLDER_PATH]
}

Where,

• FOLDER_PATH is made of the two deepest work folders
• EXCLUDED_GENOMES_AS_STRING is a simple string concatenating all excluded genomes
• HIT_ELEMENT is of the following form

{
    "sequence": "CCGGATTTACTGGGTGTAAAGGG",
    "occurences": [ OCC_ELEMENT ]
}

Where OCC_ELEMENT is of the following form

{
    "org": "Chlorobium phaeobacteroides BS1 GCF_000020545.1",
    "all_ref": [
        {
            "ref": "NC_010831.1",
            "coords": [
                "-(121992,122014)",
                "-(149641,149663)"
            ]
        }
    ]
}