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add example for lifestage, occurrenceid
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jhpoelen committed Sep 27, 2018
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8 changes: 7 additions & 1 deletion README.md
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Expand Up @@ -51,16 +51,22 @@ Each term has two columns: one for an id and another for a label. The former is

term | example | description |
--- | --- | ---
sourceOccurrenceId | 83742b5e-f0fd-4c12-a0af-c97191ea7722 | globally unique id to reference the individual originating organism, specimen. Inspired by http://rs.tdwg.org/dwc/terms/#occurrenceID .
sourceTaxonId | EOL:328583 | taxon classification id of originating organism in some taxon name authority
sourceTaxonName | Enhydra lutris | scientific name of taxon classification of originating organism
sourceBodyPartId | http://purl.obolibrary.org/obo/UBERON_0000178 | identifier of description of source body part is interacted with
sourceBodyPartName | blood | human readable description of source body part (e.g., "blood", "fruit")
sourceLifeStageId | http://purl.obolibrary.org/obo/UBERON_0007023 | identifier of description of source life stage
sourceLifeStageName | adult | human readable description of source life stage (e.g., "adult", "juvenile")
interactionTypeId | RO:0002470 | id of interaction as described by the [OBO Relations Ontology](https://github.com/oborel/obo-relations)
interactionTypeName | eats | human readable description of interactions
targetTaxonId | EOL:1971 | taxon classification id of originating organisms
targetOccurrenceId | a5ee64b5-081b-4fff-8adc-2b0c74b1f40a | globally unique id to reference the individual target organism, specimen. Inspired by http://rs.tdwg.org/dwc/terms/#occurrenceID .
targetTaxonId | EOL:1971 | taxon classification id of target organism.
targetTaxonName | Echinoidea | scientific name of taxon classification of target organism of interaction
targetBodyPartId | http://purl.obolibrary.org/obo/UBERON_0000178 | identifier of description of target body part is interacted with
targetBodyPartName | Echinoidea | human readable description of target body part (e.g., "blood")
targetLifeStageId | http://purl.obolibrary.org/obo/UBERON_0007023 | identifier of description of target life stage
targetLifeStageName | adult | human readable description of target life stage (e.g., "adult", "juvenile")
localityId | GEONAMES:5391961 | reference to geo classification like geonames.org, gazetteer or other.
localityName | San Francisco Bay, California, USA | human readable description of locale
decimalLatitude | -41.0983423 | latitude of geographic center of interaction observation location http://rs.tdwg.org/dwc/terms/index.htm#decimalLatitude
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24 changes: 12 additions & 12 deletions interactions.tsv
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sourceTaxonId sourceTaxonName sourceBodyPartId sourceBodyPartName interactionTypeId interactionTypeName targetTaxonId targetTaxonName targetBodyPartId targetBodyPartName localityId localityName decimalLatitude decimalLongitude observationDateTime referenceDoi referenceCitation
Leptoconchus incycloseris RO:0002444 parasite of Fungia (Cycloseris) costulata doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus infungites RO:0002444 parasite of Fungia (Fungia) fungites doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus ingrandifungi RO:0002444 parasite of Sandalolitha dentata doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus ingranulosa RO:0002444 parasite of Fungia (Wellsofungia) granulosa doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inlimax RO:0002444 parasite of Herpolitha limax doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inpileus RO:0002444 parasite of Halomitra pileus doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inpleuractis RO:0002444 parasite of Fungia (Pleuractis) gravis doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inpleuractis RO:0002444 parasite of Fungia (Pleuractis) moluccensis doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inpleuractis RO:0002444 parasite of Fungia (Pleuractis) paumotensis doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus massini RO:0002444 parasite of Fungia (Verrillofungia) concinna doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus massini RO:0002444 parasite of Fungia (Verrillofungia) repanda doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
sourceOccurrenceId sourceTaxonId sourceTaxonName sourceBodyPartId sourceBodyPartName sourceLifeStageId sourceLifeStageName interactionTypeId interactionTypeName targetOccurrenceId targetTaxonId targetTaxonName targetBodyPartId targetBodyPartName targetLifeStageId targetLifeStageName localityId localityName decimalLatitude decimalLongitude observationDateTime referenceDoi referenceCitation
Leptoconchus incycloseris RO:0002444 parasite of Fungia (Cycloseris) costulata doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus infungites RO:0002444 parasite of Fungia (Fungia) fungites doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus ingrandifungi RO:0002444 parasite of Sandalolitha dentata doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus ingranulosa RO:0002444 parasite of Fungia (Wellsofungia) granulosa doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inlimax RO:0002444 parasite of Herpolitha limax doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inpileus RO:0002444 parasite of Halomitra pileus doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inpleuractis RO:0002444 parasite of Fungia (Pleuractis) gravis doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inpleuractis RO:0002444 parasite of Fungia (Pleuractis) moluccensis doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus inpleuractis RO:0002444 parasite of Fungia (Pleuractis) paumotensis doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus massini RO:0002444 parasite of Fungia (Verrillofungia) concinna doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1
Leptoconchus massini RO:0002444 parasite of Fungia (Verrillofungia) repanda doi:10.1007/s13127-011-0039-1 Gittenberger, A., Gittenberger, E. (2011). Cryptic, adaptive radiation of endoparasitic snails: sibling species of Leptoconchus (Gastropoda: Coralliophilidae) in corals. Org Divers Evol, 11(1), 21–41. doi:10.1007/s13127-011-0039-1

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