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@joaander
joaander committed Nov 27, 2024
1 parent 69ac42b commit 3f19fa8
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Showing 20 changed files with 9 additions and 106 deletions.
5 changes: 0 additions & 5 deletions 00-Introducing-HOOMD-blue/03-Initializing-the-System-State.ipynb
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"jupytext": {
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"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 00-Introducing-HOOMD-blue/04-Randomizing-the-System.ipynb
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"jupytext": {
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"language": "python",
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"name": "ipython",
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5 changes: 0 additions & 5 deletions 00-Introducing-HOOMD-blue/05-Compressing-the-System.ipynb
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"jupytext": {
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"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 00-Introducing-HOOMD-blue/06-Equilibrating-the-System.ipynb
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"jupytext": {
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"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
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"name": "ipython",
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11 changes: 5 additions & 6 deletions 00-Introducing-HOOMD-blue/07-Analyzing-Trajectories.ipynb
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"cell_type": "code",
"execution_count": 2,
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"source_hidden": true
},
"nbsphinx": "hidden",
"tags": []
},
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"# documentation (https://fresnel.readthedocs.io/) if you would like to learn more.\n",
"\n",
"import io\n",
"import os\n",
"import warnings\n",
"\n",
"import fresnel\n",
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" scene.background_color = (1, 1, 1)\n",
" samples = 2000\n",
" if \"CI\" in os.environ:\n",
" samples = 100 \n",
" samples = 100\n",
" return tracer.sample(scene, samples=samples)\n",
"\n",
"\n",
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"jupytext": {
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"name": "ipython",
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5 changes: 0 additions & 5 deletions 01-Introducing-Molecular-Dynamics/00-index.ipynb
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"jupytext": {
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"name": "ipython",
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5 changes: 0 additions & 5 deletions 01-Introducing-Molecular-Dynamics/01-Molecular-Dynamics-Simulations.ipynb
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"jupytext": {
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"language": "python",
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"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 01-Introducing-Molecular-Dynamics/02-Initializing-a-Random-System.ipynb
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}
],
"metadata": {
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"name": "python3"
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"codemirror_mode": {
"name": "ipython",
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7 changes: 1 addition & 6 deletions 01-Introducing-Molecular-Dynamics/03-Compressing-the-System.ipynb
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"# This is not intended as a full tutorial on fresnel - see the fresnel user\n",
"# documentation (https://fresnel.readthedocs.io/) if you would like to learn more.\n",
"\n",
"import warnings\n",
"import os\n",
"import warnings\n",
"\n",
"import fresnel\n",
"import IPython\n",
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}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 02-Logging/00-index.ipynb
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"jupytext": {
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"name": "python3"
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"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 02-Logging/01-Logging-to-a-file.ipynb
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"jupytext": {
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"display_name": "Python 3 (ipykernel)",
"language": "python",
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"name": "ipython",
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5 changes: 0 additions & 5 deletions 02-Logging/02-Saving-Array-Quantities.ipynb
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}
],
"metadata": {
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"language": "python",
"name": "python3"
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"name": "ipython",
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5 changes: 0 additions & 5 deletions 02-Logging/03-Storing-Particle-Shape.ipynb
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"jupytext": {
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"language": "python",
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"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 02-Logging/04-Writing-Formatted-Output.ipynb
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"jupytext": {
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"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 06-Modelling-Rigid-Bodies/01-Introduction-to-Rigid-Bodies.ipynb
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}
],
"metadata": {
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"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
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"language_info": {
"codemirror_mode": {
"name": "ipython",
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7 changes: 1 addition & 6 deletions 06-Modelling-Rigid-Bodies/02-Running-Rigid-Body-Simulations.ipynb
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"# This is not intended as a full tutorial on fresnel - see the fresnel user\n",
"# documentation (https://fresnel.readthedocs.io/) if you would like to learn more.\n",
"\n",
"import warnings\n",
"import os\n",
"import warnings\n",
"\n",
"import fresnel\n",
"import IPython\n",
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}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
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8 changes: 1 addition & 7 deletions 06-Modelling-Rigid-Bodies/03-Preparing-a-General-Body.ipynb
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"cell_type": "markdown",
"id": "0",
"metadata": {
"collapsed": true,
"jupyter": {
"outputs_hidden": true
},
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},
"outputs": [],
"source": [
"import warnings\n",
"import os\n",
"import warnings\n",
"\n",
"import fresnel\n",
"import IPython\n",
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}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 08-Placing-Barriers-in-the-Simulation-Box/02-Fixed-particles.ipynb
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"jupytext": {
"notebook_metadata_filter": "-all"
},
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
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7 changes: 1 addition & 6 deletions 08-Placing-Barriers-in-the-Simulation-Box/04-Wall-potential-MD.ipynb
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" samples = 2000\n",
" if \"CI\" in os.environ:\n",
" samples = 100\n",
" return IPython.display.Image(tracer.sample(scene, samples=samples)._repr_png_()) "
" return IPython.display.Image(tracer.sample(scene, samples=samples)._repr_png_())"
]
},
{
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"jupytext": {
"notebook_metadata_filter": "-all"
},
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
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5 changes: 0 additions & 5 deletions 08-Placing-Barriers-in-the-Simulation-Box/05-Wall-potential-HPMC.ipynb
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"jupytext": {
"notebook_metadata_filter": "-all"
},
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
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