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@bdice bdice released this 30 Mar 19:21
· 95 commits to main since this release
v2.0.0
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[2.0.0] -- 2023-03-30

Added

  • Official support for Python 3.11 (#875).
  • H5Store related errors are now included in the public API (#775).
  • Users can now access the project to which a job belongs with the Job.project attribute (#808).

Changed

  • Functions raising AssertionError now raise RuntimeError (#612).
  • State points and documents require keys to be of type str (#719).
  • The keyword _id of the Job constructor has been renamed to id_ (#681).
  • The signac schema to use version 2. This update involves a number of changes:
    • The project configuration is now stored at .signac/config instead of signac.rc or .signacrc (#678).
    • Schema versions are now identified by simple integers rather than semantic versioning style versions (#688).
    • Projects no longer have names and are identified solely by their root directories. This change also affects a number of public APIs where names are including, most prominently signac.init_project and Project.init_project. Projects can now be constructed with just a root directory rather than a preloaded config (#677, #684, #706).
    • Project workspaces are no longer configurable, but are instead always defined as a subdirectory of the Project's root directory called workspace (#714).
  • Rather than searching upwards until the root, load_config will only load configuration files in the specified directory, which is assumed to be a project directory, as well as the user's home directory (#711).
  • Changed the root parameter to path in the signac.get_project and signac.init_project functions and corresponding Project methods (#757, #758).
  • The prefix argument to $ signac view is now optional and can be provided with -p/--prefix (#653, #774).
  • Tests are run with xfail_strict = True (#850).
  • Detection of an invalid config will raise an error rather than a debug log (#855).
  • The package namespace has been flattened so that most functionality is directly available in the signac namespace (#756, #868).
  • The calc_id function has been moved from the hashing module to the job module (#873).
  • Tests are run with all warnings treated as errors (#871).
  • The contents of the syncutil module have been moved into sync (#869).
  • The project now leverages a fully pyproject.toml-driven build (#878).

Removed

  • The pre-SyncedCollection synchronized dictionary classes, including SyncedDict, SyncedAttrDict, and JSONDict (#577).
  • The old custom JSON encoder and dumps wrapper (#577).
  • The MPIPool and the filesystems.py module (#575).
  • The following Project methods: get_id, build_job_search_index, build_job_statepoint_index, find_job_ids, reset_statepoint, update_statepoint, create_access_module, index, dump_statepoints, get_statepoint, read_statepoints, write_statepoints, groupbydoc, root_directory, num_jobs (#574, #593, #599, #601, #752).
  • The following Job methods: get_id, workspace, ws, reset_statepoint (#578, #752).
  • The syncutil.copytree method (#581).
  • All Crawlers, including RegexFileCrawler, MainCrawler, MasterCrawler, SignacProjectCrawler, and BaseCrawler, in addition to all associated functionality in indexing.py (#580).
  • The cite.py module (#594).
  • The following types of exceptions: AuthenticationError, ExportError`, FetchError, PermissionsError`` (#595, #596).
  • All MongoDB database functionality, including the db subpackage, the connection, crypt, and host submodules in the common subpackage, and all associated configuration information (#576, #596).
  • The JobSearchIndex class (#587).
  • The ability to pass indexes to various Project methods (#599).
  • The following JobsCursor methods: groupbydoc, next (#601, #604).
  • The Project.config property is no longer mutable. Use the command line $ signac config to modify configuration (#608, #246, #244).
  • The config module and all its functions, all of which have been made private (#674, #753, #789, #847, #877).
  • Project subclasses can no longer define a Job subclass to use (#588, #693).
  • The Collection class (#664, #667, #683).
  • The project CLI subcommand (#752).
  • The --workspace option for the command line job subcommand (#752).
  • The ability to call Project.workspace, it is strictly a property now (#752).
  • ProjectSchema.__call__, ProjectSchema.detect (#752).
  • The --doc-filter option for several command line subcommands (#613, #795).
  • The public API of the synced_collection subpackage (#807, #790).
  • The warnings module (#815).
  • The signac.common.validate module (#853).
  • The Config class (#860).
  • The DictManager class (#858).
  • The signac.testing module (#863).
  • Zenodo is no longer updated (#903).
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