Merge pull request #381 from glotzerlab/update-packages-trunk

Update packages on trunk

make_dockerfiles.py

@@ -35,10 +35,10 @@ def write(fname, templates, **kwargs):
     test_template = env.get_template('test.jinja')
 
     write('docker/nompi/Dockerfile', [base_template, glotzerlab_software_template, test_template, finalize_template],
-          FROM='nvidia/cuda:11.1.1-devel-ubuntu20.04',
+          FROM='nvidia/cuda:11.8.0-devel-ubuntu20.04',
           ENABLE_MPI='off',
           MAKEJOBS=multiprocessing.cpu_count()+2,
-          CUDA_VERSION='11.1',
+          CUDA_VERSION='11.8',
           **versions)
 
     # see https://stackoverflow.com/questions/5470257/how-to-see-which-flags-march-native-will-activate

packages.yml

@@ -28,7 +28,7 @@ pybind11:
   ignore: alpha,rc,beta
   include_v_prefix: false
   repository: https://github.com/pybind/pybind11
-  version: 2.11.1
+  version: 2.12.0
 qhull:
   ignore: alpha,rc,beta
   include_v_prefix: false

requirements-source.txt

@@ -1,7 +1,7 @@
-Cython==3.0.9
+Cython==3.0.10
 numpy==1.26.4
 pkgconfig==1.5.5
-pybind11==2.11.1
+pybind11==2.12.0
 pythran==0.15.0
 scikit-build==0.17.6
 scipy==1.12.0

requirements.txt

@@ -7,7 +7,7 @@ rowan==1.3.0.post1
 coxeter==0.8.0
 plato-draw==1.12.0
 signac==2.2.0
-signac-flow==0.28.0
+signac-flow==0.29.0
 signac-dashboard==0.6.1
 
 # transitive dependencies
@@ -24,7 +24,7 @@ matplotlib==3.8.3
 notebook==7.1.2
 opencv-python==4.9.0.80
 pandas==2.2.1
-Pillow==10.2.0
+Pillow==10.3.0
 pyqt5==5.15.10
 pyyaml==6.0.1
 scikit-learn==1.4.1.post1
@@ -33,13 +33,13 @@ statsmodels==0.14.1
 
 
 # test requirements
-hypothesis==6.99.9
+hypothesis==6.100.0
 pytest==8.1.1
 miniball==1.2.0
 sympy==1.12
 tables==3.9.2
 coverage==7.4.4
 click==8.1.7
-pytest-cov==4.1.0
+pytest-cov==5.0.0
 ruamel.yaml==0.18.6
-gitpython==3.1.42
+gitpython==3.1.43

script/crusher/install.sh

@@ -100,8 +100,8 @@ fi
 # install pybind11 headers
 if [ ! -f $ROOT/include/pybind11/pybind11.h ]
 then
-curl -SL https://github.com/pybind/pybind11/archive/v2.11.1.tar.gz | tar -xzC $BUILDDIR && \
-    cd pybind11-2.11.1 && \
+curl -SL https://github.com/pybind/pybind11/archive/v2.12.0.tar.gz | tar -xzC $BUILDDIR && \
+    cd pybind11-2.12.0 && \
     mkdir build && cd build && \
     cmake ../ -DCMAKE_INSTALL_PREFIX=$ROOT -DPYBIND11_TEST=off && \
     make install && \

script/frontier/install.sh

@@ -128,8 +128,8 @@ fi
 # install pybind11 headers
 if [ ! -f $ROOT/include/pybind11/pybind11.h ]
 then
-curl -SL https://github.com/pybind/pybind11/archive/v2.11.1.tar.gz | tar -xzC $BUILDDIR && \
-    cd pybind11-2.11.1 && \
+curl -SL https://github.com/pybind/pybind11/archive/v2.12.0.tar.gz | tar -xzC $BUILDDIR && \
+    cd pybind11-2.12.0 && \
     mkdir build && cd build && \
     cmake ../ -DCMAKE_INSTALL_PREFIX=$ROOT -DPYBIND11_TEST=off && \
     make install && \