Update signac links.

.github/workflows/generate-changelog.py

@@ -7,7 +7,7 @@
 workspace = os.environ["GITHUB_WORKSPACE"]
 with open(os.path.join(workspace, "changelog.txt")) as f:
     for line in f:
-        if re.search("\[\d+\.\d+\.\d+\] -- \d{4}-\d{2}-\d{2}", line):
+        if re.search(r"\[\d+\.\d+\.\d+\] -- \d{4}-\d{2}-\d{2}", line):
             if include:
                 # We're now encountering the second header, so break
                 break

CODE_OF_CONDUCT.md

@@ -1,5 +1,5 @@
 # Code of Conduct
 
 The signac team is committed to fostering a diverse and welcoming community.
-The synced_collections project has therefore adopted the [Contributor Covenant Code of Conduct](https://signac.io/conduct/).
+The synced_collections project has therefore adopted the [Contributor Covenant Code of Conduct](https://signac.readthedocs.io/conduct/).
 Please email [signac-support@umich.edu](mailto:signac-support@umich.edu) if you have any questions or concerns.

CONTRIBUTING.md

@@ -7,8 +7,8 @@ Please use the [GitHub issue tracker](https://github.com/glotzerlab/synced_colle
 
 ## Writing Documentation
 
-A general introduction in the form of tutorials, guides, and recipes is published as part of the framework documentation at [https://docs.signac.io](https://docs.signac.io).
-The API of each package as part of the framework is documented in the form of docstrings, which are published on `https://docs.signac.io/projects/$package`, where `$package` is currently one of `core`, `flow`, `dashboard`, or `synced_collections`.
+A general introduction in the form of tutorials, guides, and recipes is published as part of the framework documentation at [https://signac.readthedocs.io](https://signac.readthedocs.io).
+The API of each package as part of the framework is documented in the form of docstrings, which are published on `https://signac.readthedocs.io/projects/$package`, where `$package` is currently one of `core`, `flow`, `dashboard`, or `synced_collections`.
 
 Anyone is invited to add to or edit any part of the documentation.
 To fix a spelling mistake or make minor edits, click on the **Edit on GitHub** button in the top-right corner.
@@ -26,7 +26,7 @@ All contributors must agree to the Contributor Agreement ([ContributorAgreement.
 
 ### Guideline for Code Contributions
 
-Please see [our contributions guide](https://docs.signac.io/en/latest/community.html#contributions) for detailed development guidelines.
+Please see [our contributions guide](https://signac.readthedocs.io/en/latest/community.html#contributions) for detailed development guidelines.
 * Use the [OneFlow](https://www.endoflineblog.com/oneflow-a-git-branching-model-and-workflow) model of development:
   - Both new features and bug fixes should be developed in branches based on `main`.
   - Hotfixes (critical bugs that need to be released *fast*) should be developed in a branch based on the latest tagged release.
@@ -35,10 +35,10 @@ Please see [our contributions guide](https://docs.signac.io/en/latest/community.
 * Create [unit tests](https://en.wikipedia.org/wiki/Unit_testing) and [integration tests](https://en.wikipedia.org/wiki/Integration_testing) that cover the common cases and the corner cases of the code.
 * Preserve backwards-compatibility whenever possible, and make clear if something must change.
 * Document any portions of the code that might be less clear to others, especially to new developers.
-* Write API documentation in this package, along with any guides or concept overviews that are specific to synced_collections. Any information relevant to how synced_collections interact with the rest of the framework should go in the [framework documentation](https://docs.signac.io/) ([source](https://github.com/glotzerlab/signac-docs/)).
+* Write API documentation in this package, along with any guides or concept overviews that are specific to synced_collections. Any information relevant to how synced_collections interact with the rest of the framework should go in the [framework documentation](https://signac.readthedocs.io/) ([source](https://github.com/glotzerlab/signac-docs/)).
 * Use inclusive language in all documentation and code. The [Google developer documentation style guide](https://developers.google.com/style/inclusive-documentation) is a helpful reference.
 
-Please see the [Support](https://docs.signac.io/projects/core/en/latest/support.html) section as part of the documentation for detailed development guidelines.
+Please see the [Support](https://signac.readthedocs.io/projects/core/en/latest/support.html) section as part of the documentation for detailed development guidelines.
 
 ### Code Style
 

README.md

@@ -3,29 +3,29 @@
 [![Affiliated with NumFOCUS](https://img.shields.io/badge/NumFOCUS-affiliated%20project-orange.svg?style=flat&colorA=E1523D&colorB=007D8A)](https://numfocus.org/sponsored-projects/affiliated-projects)
 [![GitHub Actions](https://github.com/glotzerlab/synced_collections/actions/workflows/run-pytest.yml/badge.svg)](https://github.com/glotzerlab/synced_collections/actions)
 [![License](https://img.shields.io/github/license/glotzerlab/synced_collections.svg)](https://github.com/glotzerlab/synced_collections/blob/main/LICENSE.txt)
-[![Slack](https://img.shields.io/badge/Slack-chat%20support-brightgreen.svg?style=flat&logo=slack)](https://signac.io/slack-invite/)
+[![Slack](https://img.shields.io/badge/Slack-chat%20support-brightgreen.svg?style=flat&logo=slack)](https://signac.readthedocs.io/slack-invite/)
 [![Twitter](https://img.shields.io/twitter/follow/signacdata?style=social)](https://twitter.com/signacdata)
 [![GitHub Stars](https://img.shields.io/github/stars/glotzerlab/synced_collections?style=social)](https://github.com/glotzerlab/synced_collections/)
 [![PyPI](https://img.shields.io/pypi/v/synced_collections.svg)](https://pypi.org/project/synced_collections/)
 [![conda-forge](https://img.shields.io/conda/vn/conda-forge/synced_collections.svg?style=flat)](https://anaconda.org/conda-forge/synced_collections)
-[![RTD](https://img.shields.io/readthedocs/synced_collections.svg?style=flat)](https://docs.signac.io)
+[![RTD](https://img.shields.io/readthedocs/synced_collections.svg?style=flat)](https://signac.readthedocs.io)
 [![PyPI-downloads](https://img.shields.io/pypi/dm/synced_collections.svg?style=flat)](https://pypistats.org/packages/synced_collections)
 
-The [**signac** framework](https://signac.io) helps users manage and scale file-based workflows, facilitating data reuse, sharing, and reproducibility.
+The [**signac** framework](https://signac.readthedocs.io) helps users manage and scale file-based workflows, facilitating data reuse, sharing, and reproducibility.
 
 The **synced_collections** package provides Pythonic abstractions over various underlying data stores, presenting APIs that behave like standard built-in Python collections like dicts.
 **synced_collections** form the backbone of **signac**'s data and metadata storage, but may be used just as easily outside of **signac**.
 For instance, users wishing to access a JSON file on disk like a dictionary and automatically persist all changes could use the `synced_collections.JSONDict`.
 
 ## Resources
 
-- [Slack Chat Support](https://signac.io/slack-invite/):
+- [Slack Chat Support](https://signac.readthedocs.io/slack-invite/):
   Get help and ask questions on the **signac** Slack workspace.
-- [**signac** website](https://signac.io/):
+- [**signac** website](https://signac.readthedocs.io/):
   Framework overview and news.
-- [Framework documentation](https://docs.signac.io/):
+- [Framework documentation](https://signac.readthedocs.io/):
   Examples, tutorials, topic guides, and package Python APIs.
-- [Package documentation](https://docs.signac.io/projects/synced-collections/):
+- [Package documentation](https://signac.readthedocs.io/projects/synced-collections/):
   API reference for the **synced_collections** package.
 
 ## Installation
@@ -45,7 +45,7 @@ To install **synced_collections** *via* **pip**, execute:
 pip install synced_collections
 ```
 
-**Detailed information about alternative installation methods can be found in the [documentation](https://docs.signac.io/en/latest/installation.html).**
+**Detailed information about alternative installation methods can be found in the [documentation](https://signac.readthedocs.io/en/latest/installation.html).**
 
 ## Quickstart
 
@@ -74,7 +74,7 @@ $ python -m pytest tests/
 ## Acknowledgment
 
 When using **synced_collections** as part of your work towards a publication, we would really appreciate that you acknowledge the **signac** frameworkf appropriately.
-We have prepared examples on how to do that [here](https://docs.signac.io/en/latest/acknowledge.html).
+We have prepared examples on how to do that [here](https://signac.readthedocs.io/en/latest/acknowledge.html).
 **Thank you very much!**
 
 The signac framework is a [NumFOCUS Affiliated Project](https://numfocus.org/sponsored-projects/affiliated-projects).

doc/index.rst

@@ -6,16 +6,16 @@ synced_collections package documentation
     This is documentation for the **synced_collections** package, which is part of the signac_ framework.
     See `here <signac-docs_>`_ for a comprehensive introduction to the **signac** *framework*.
 
-.. _signac: https://signac.io/
-.. _signac-docs: https://docs.signac.io/
+.. _signac: https://signac.readthedocs.io/
+.. _signac-docs: https://signac.readthedocs.io/
 
 Contents
 --------
 
 .. toctree::
    :hidden:
 
-   Go to Framework Documentation <https://docs.signac.io/>
+   Go to Framework Documentation <https://signac.readthedocs.io/>
 
 .. toctree::
    :maxdepth: 2

doc/support.rst

@@ -4,7 +4,7 @@
 Support and Development
 =======================
 
-To get help using the **synced_collections** package, join the `signac Slack workspace <https://signac.io/slack-invite/>`_ or send an email to `signac-support@umich.edu <mailto:signac-support@umich.edu>`_.
+To get help using the **synced_collections** package, join the `signac Slack workspace <https://signac.readthedocs.io/slack-invite/>`_ or send an email to `signac-support@umich.edu <mailto:signac-support@umich.edu>`_.
 
 The **synced_collections** package is hosted on `GitHub <https://github.com/glotzerlab/synced_collections>`_ and licensed under the open-source BSD 3-Clause license.
 Please use the `repository's issue tracker <https://github.com/glotzerlab/synced_collections/issues>`_ to report bugs or request new features.
@@ -15,7 +15,7 @@ Code contributions
 
 This project is open-source.
 Users are highly encouraged to contribute directly by implementing new features and fixing issues.
-Development for packages as part of the **signac** framework should follow the general development guidelines outlined `here <https://docs.signac.io/en/latest/community.html#contributions>`__.
+Development for packages as part of the **signac** framework should follow the general development guidelines outlined `here <https://signac.readthedocs.io/en/latest/community.html#contributions>`__.
 
 A brief summary of contributing guidelines are outlined in the `CONTRIBUTING.md <https://github.com/glotzerlab/synced_collections/blob/main/CONTRIBUTING.md>`_ file as part of the repository.
 All contributors must agree to the `Contributor Agreement <https://github.com/glotzerlab/synced_collections/blob/main/ContributorAgreement.md>`_ before their pull request can be merged.
@@ -113,7 +113,7 @@ Then you can build the documentation from within the ``doc/`` directory as part
 .. note::
 
     Documentation as part of the package should be largely limited to the API.
-    More elaborate documentation on how to integrate **synced_collections** into a computational workflow should be documented as part of the `framework documentation <https://docs.signac.io>`_, which is maintained `here <https://github.com/glotzerlab/signac-docs>`__.
+    More elaborate documentation on how to integrate **synced_collections** into a computational workflow should be documented as part of the `framework documentation <https://signac.readthedocs.io>`_, which is maintained `here <https://github.com/glotzerlab/signac-docs>`__.
 
 
 Updating the changelog

pyproject.toml

@@ -36,8 +36,8 @@ redis = ["redis"]
 mongodb = ["pymongo"]
 
 [project.urls]
-Homepage = "https://signac.io"
-Documentation = "https://docs.signac.io"
+Homepage = "https://signac.readthedocs.io"
+Documentation = "https://signac.readthedocs.io"
 Download = "https://pypi.org/project/synced_collections/"
 Source = "https://github.com/glotzerlab/synced_collections"
 Issues = "https://github.com/glotzerlab/synced_collections/issues"