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update export files for glycan data release 1.19.0
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@edwardsnj
edwardsnj committed Oct 1, 2024
1 parent d5b7436 commit f1aab15
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Showing 58 changed files with 409,535 additions and 63,345 deletions.
1,882 changes: 1,882 additions & 0 deletions smw/glycandata/export/allglycan.tsv
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918 changes: 809 additions & 109 deletions smw/glycandata/export/allgtcxrefs.tsv
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3,680 changes: 3,680 additions & 0 deletions smw/glycandata/export/allmotifaligns.tsv
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3,921 changes: 3,921 additions & 0 deletions smw/glycandata/export/alltaxacnt.tsv
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31 changes: 31 additions & 0 deletions smw/glycandata/export/bcsdb.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -143,8 +143,31 @@ G24090VR 23169
G24481XT 101199
G25186NY 144016
G25656CV 264536
G26014QP 26957
G26039ES 2141
G26039ES 26961
G26089XS 101033
G26089XS 10573
G26089XS 117746
G26089XS 118190
G26089XS 122543
G26089XS 126836
G26089XS 23633
G26089XS 24809
G26089XS 24810
G26089XS 26283
G26089XS 26900
G26089XS 4902
G26089XS 6270
G26089XS 6569
G26089XS 6889
G26089XS 7122
G26089XS 7490
G26089XS 7491
G26089XS 8005
G26089XS 8902
G26089XS 8931
G26089XS 9233
G27609YZ 161
G27609YZ 204
G28141KV 101078
Expand Down Expand Up @@ -179,6 +202,7 @@ G35146UA 128259
G35146UA 136198
G35146UA 144847
G35448LP 149589
G35724FX 6219
G35777BB 103376
G35841YO 143736
G37117TJ 23290
Expand Down Expand Up @@ -222,6 +246,7 @@ G41702OS 1799
G41876BL 129745
G42049JU 20337
G42049JU 6917
G42105XL 26956
G42727QA 115936
G42937NS 106299
G42937NS 144845
Expand Down Expand Up @@ -356,6 +381,7 @@ G64262FG 26821
G64402PV 20384
G64943CI 107873
G65214YE 129744
G65437NL 123820
G65889KE 131845
G65889KE 23947
G66163TI 3476
Expand All @@ -381,6 +407,7 @@ G68185CW 20303
G68544GH 23683
G68558BC 23431
G68558BC 26968
G68596GJ 135527
G69030ZC 103783
G69265FU 4430
G69440RD 26816
Expand Down Expand Up @@ -414,6 +441,7 @@ G75291AO 4649
G75372BZ 138790
G75485SI 131846
G75557QL 101600
G75632XE 6939
G76044NZ 101082
G76540HB 22971
G76949FV 101083
Expand Down Expand Up @@ -457,6 +485,7 @@ G84444TS 1832
G84444TS 6026
G84462PG 149573
G84570YO 216
G84575BO 6820
G84596VQ 25818
G84899DL 115937
G85016IG 144841
Expand All @@ -469,6 +498,8 @@ G86723LO 130169
G86723LO 143972
G87090RU 25768
G87492XO 23342
G87776GF 123551
G87776GF 20099
G87838NG 5034
G87841AX 160213
G87885DY 101604
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12 changes: 6 additions & 6 deletions smw/glycandata/export/byonic_glygen_human_nlinked.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -8,10 +8,8 @@ HexNAc(2)Hex(6)dHex(1) % 1524.533595, G02860WV
HexNAc(2)Hex(6)Phospho(2) % 1538.408348, G76535FN
HexNAc(4)Hex(4)Sulpho(1) % 1540.485599, G92119WG
HexNAc(2)Hex(7) % 1540.528510, G31852PQ
HexNAc(3)Hex(4)NeuGc(1) % 1564.539743, G05243OF
HexNAc(4)Hex(3)dHex(1)Pent(1) % 1576.576129, G81920JR
HexNAc(5)Hex(3)Sulpho(1) % 1581.512148, G63273GB
HexNAc(4)Hex(3)NeuGc(1) % 1605.566292, G58194AN
HexNAc(4)Hex(5) % 1622.581608, G10486CT
HexNAc(3)Hex(6)Phospho(1) % 1661.521390, G15205QB
HexNAc(1)Hex(9) % 1661.554784, G45703RF
Expand All @@ -24,12 +22,10 @@ HexNAc(3)Hex(4)dHex(1)NeuAc(1) % 1694.602737, G72791KH
HexNAc(3)Hex(4)dHex(3) % 1695.623138, G03930BU
HexNAc(2)Hex(8) % 1702.581333, G62765YT
HexNAc(3)Hex(4)dHex(1)NeuGc(1) % 1710.597652, G66139DE
HexNAc(3)Hex(5)NeuGc(1) % 1726.592567, G47913JC
HexNAc(5)Hex(3)dHex(1)Sulpho(1) % 1727.570057, G69121UK
HexNAc(3)Hex(6)dHex(1) % 1727.612968, G03574QJ
HexNAc(4)Hex(3)dHex(1)NeuAc(1) % 1735.629286, G36923NX
HexNAc(5)Hex(4)Sulpho(1) % 1743.564972, G39411LN
HexNAc(4)Hex(4)NeuGc(1) % 1767.619116, G92821TF
HexNAc(6)Hex(3)Sulpho(1) % 1784.591521, G89430VM
HexNAc(5)Hex(3)NeuAc(1) % 1792.650750, G29898ES
HexNAc(1)Hex(10) % 1823.607608, G04681UD
Expand Down Expand Up @@ -62,10 +58,10 @@ HexNAc(2)Hex(10) % 2026.686980, G83460ZZ
HexNAc(6)Hex(5) % 2028.740353, G43769HG
HexNAc(5)Hex(4)NeuAc(1)Sulpho(1) % 2034.660388, G79961MR
HexNAc(3)Hex(6)dHex(1)NeuGc(1) % 2034.703299, G83466CO
HexNAc(5)Hex(4)dHex(2)Sulpho(1) % 2035.680789, G42407LQ
HexNAc(5)Hex(5)dHex(1)Phospho(1) % 2051.685220, G62990JB
HexNAc(7)Hex(3)dHex(1) % 2053.771988, G67367OT
HexNAc(4)Hex(5)dHex(1)NeuAc(1) % 2059.734933, G08293MJ
HexNAc(4)Hex(5)dHex(3) % 2060.755335, G87051GH
HexNAc(3)Hex(9) % 2067.713529, G50713DU
HexNAc(7)Hex(4) % 2069.766902, G34029GR
HexNAc(4)Hex(5)dHex(1)NeuGc(1) % 2075.729848, G80280AS
Expand Down Expand Up @@ -105,7 +101,7 @@ HexNAc(8)Hex(4) % 2272.846275, G59334JE
HexNAc(5)Hex(4)NeuGc(2) % 2277.788820, G30862UC
HexNAc(5)Hex(6)NeuAc(1) % 2278.809221, G40926MX
HexNAc(5)Hex(6)dHex(2) % 2279.829622, G66933CM
HexNAc(6)Hex(3)dHex(2)NeuAc(1) % 2287.845940, G19784PR
HexNAc(6)Hex(3)dHex(2)NeuAc(1) % 2287.845941, G19784PR
HexNAc(5)Hex(6)dHex(1)Sulpho(2) % 2293.685342, G22913YS
HexNAc(5)Hex(6)NeuGc(1) % 2294.804135, G80160PH
HexNAc(6)Hex(3)dHex(2)NeuGc(1) % 2303.840855, G60785ZW
Expand Down Expand Up @@ -307,6 +303,7 @@ HexNAc(7)Hex(6)dHex(1)NeuAc(3) % 3413.216708, G26006IS
HexNAc(6)Hex(9)dHex(1)NeuAc(1)NeuGc(1) % 3421.195304, G03962UW
HexNAc(9)Hex(9)dHex(1) % 3432.247674, G08578KJ
HexNAc(7)Hex(7)dHex(6) % 3432.272826, G38508ZL
HexNAc(5)Hex(6)NeuAc(5) % 3443.190887, G67113SI
HexNAc(7)Hex(7)dHex(1)NeuAc(2)Sulpho(2) % 3444.087744, G07238JI
HexNAc(7)Hex(8)dHex(1)NeuAc(2) % 3446.226938, G95484XN
HexNAc(9)Hex(10) % 3448.242588, G15127JD
Expand All @@ -319,7 +316,9 @@ HexNAc(6)Hex(7)NeuAc(4) % 3517.227667, G11115RO
HexNAc(6)Hex(7)dHex(2)NeuAc(3) % 3518.248068, G87056QU
HexNAc(8)Hex(9)dHex(1)NeuAc(1) % 3520.263718, G76733PY
HexNAc(6)Hex(7)NeuAc(3)NeuGc(1) % 3533.222581, G41925PC
HexNAc(6)Hex(8)dHex(1)NeuAc(3) % 3534.242982, G80586MF
HexNAc(6)Hex(7)NeuAc(2)NeuGc(2) % 3549.217496, G42555WL
HexNAc(8)Hex(11)dHex(1) % 3553.273948, G24417MN
HexNAc(6)Hex(7)NeuAc(1)NeuGc(3) % 3565.212411, G14943SF
HexNAc(7)Hex(7)dHex(1)NeuAc(3) % 3575.269532, G25216KM
HexNAc(9)Hex(9)dHex(2) % 3578.305583, G33792IQ
Expand Down Expand Up @@ -351,6 +350,7 @@ HexNAc(10)Hex(11)dHex(1) % 3959.432693, G52687MJ
HexNAc(7)Hex(8)dHex(1)NeuAc(4) % 4028.417772, G64615IX
HexNAc(7)Hex(8)dHex(1)NeuAc(3)NeuGc(1) % 4044.412686, G06818RT
HexNAc(8)Hex(9)dHex(1)NeuAc(3) % 4102.454551, G27033WF
HexNAc(8)Hex(11)dHex(1)NeuAc(2) % 4135.464781, G80338YO
HexNAc(11)Hex(11)dHex(1) % 4162.512066, G39258LN
HexNAc(7)Hex(8)dHex(2)NeuAc(4) % 4174.475681, G55848QM
HexNAc(9)Hex(7)dHex(1)NeuAc(4) % 4272.523693, G65057SM
Expand Down
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