GlyGen-GlycanData-Export-v1.9.0
·
409 commits
to master
since this release
- Glycans: 181 insertions(+), 168 deletions(-): 33728 entries.
- Motif alignments: remove Polysialic Acid alignments (and retired glycan alignments)
- Motifs: Polysialic acid removed (to be re-added later).
- Classification: New N-glycan subtypes: arm fucosylated, alditol-reduced; Match to superclass N-glycan core; relaxation of definition of high-mannose
- Glycam-IUPAC Sequences: Patch at reducing end for compatibility with GLYCAM.
- Glyconnect XRef, Taxa, Species: GlyConnectStructure or GlyConnectComposition designation
- GlycoTree Enzyme files: removed, obtain from the sandbox repository
- GlyGen retired: 47 new entries
- Images: New image generation infrastructure (visual updates), 99% (png), 97%(svg) of accessions, drop CFG images.
- Addition of GlyCosmos cross references
- Remove fully determined annotation and zipfile of Fully Determined GlycoCT sequences. Use Missing Score 0 from subsumption instead.
- FruitFly species annotations added
- MonosaccharideDB removed from GlycanData (not exported)
- Addition of GlycoWorkBench sequence format, TSV file and zip file as with other sequences.
- IUPAC sequences derived from GlyCosmos, not GlyTouCan
- PDB, GlycomeDB, CFG, Carbbank, GLYCOSCIENCES.de CrossRefs missing from GlyTouCan drawn from GlyGen-GlycanData-Export-v1.8.0 export files.
- GlyTouCan missing Taxa annotations drawn from GlyGen-GlycanData-Export-v1.8.0 export files.