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Merged Travis [CI SKIP][SKIP CI]
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brettbj committed Oct 10, 2016
1 parent 289c88f commit 403cfa2
Showing 1 changed file with 4 additions and 7 deletions.
11 changes: 4 additions & 7 deletions wercker.yml
Original file line number Diff line number Diff line change
Expand Up @@ -16,24 +16,21 @@ build:
kallisto index -i transcripts.idx transcripts.fasta.gz &>-
kallisto quant -i transcripts.idx -o output -b 100 reads_1.fastq.gz reads_2.fastq.gz &>-
cp -R /kallisto/test/output /pipeline/source/wercker/output
- script:
name: Plot Results
code: |
cd /pipeline/source
jupyter nbconvert --to html --execute ./Wercker_Plotting.ipynb
- script:
name: Push Results back to github
code: |
git config user.email "alexwhan@gmail.com"
git config user.name "Alex Whan"
git config user.email "brettbj@gmail.com"
git config user.name "Brett Beaulieu-Jones"
git config --global push.default simple
git remote set-url origin https://alexwhan:$git_publish_key@github.com/alexwhan/continuous_analysis.git
git remote set-url origin https://brettbj:$git_publish_key@github.com/greenelab/continuous_analysis.git
git checkout master
git pull
git add wercker/.
git commit -a -m "Wercker output [CI SKIP] [SKIP CI] ."
git stash
git push
git push

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