changes to multi-omics plots

greenelab · Jul 1, 2022 · 41d2521 · 41d2521
1 parent 8a582f9
commit 41d2521
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Showing 3 changed files with 133 additions and 134 deletions.
diff --git a/02_classify_mutations/nbconverted/plot_expression_gene_sets.py b/02_classify_mutations/nbconverted/plot_expression_gene_sets.py
@@ -149,7 +149,7 @@
 all_results_df.sort_values(by='p_value').head(10)
 
 
-# In[7]:
+# In[13]:
 
 
 sns.set({'figure.figsize': (24, 6)})
@@ -171,7 +171,7 @@
                           SIG_ALPHA,
                           metric=plot_metric,
                           verbose=True,
-                          label_x_lower_bounds=[0.2, 0.2, 0.4],
+                          label_x_lower_bounds=[0.2, 0.3, 0.5],
                           label_y_lower_bounds=[4, 4, 5],
                           mark_overlap=True,
                           overlap_reference='cancer gene set')

diff --git a/05_classify_mutations_multimodal/nbconverted/plot_multimodal_results.py b/05_classify_mutations_multimodal/nbconverted/plot_multimodal_results.py
@@ -31,7 +31,7 @@
 
 
 BAYES_OPT = False
-MLP = True
+MLP = False
 
 if BAYES_OPT:
     results_dir = Path(
@@ -226,7 +226,8 @@
     handle = mpatches.Patch(color=colors[ix], label=data)
     handles.append(handle)
 
-plt.legend(title='Data types used to train model', handles=handles, loc='lower right')
+plt.legend(title='', handles=handles,
+           loc='lower right', fontsize=15, title_fontsize=15)
 plt.tight_layout()
 
 if SAVE_FIGS:
@@ -408,7 +409,7 @@
 compare_df[compare_df.gene == 'TP53'].head(10)
 
 
-# In[ ]:
+# In[17]:
 
 
 sns.set({'figure.figsize': (13, 6)})
@@ -426,9 +427,3 @@
     plt.savefig(images_dir / svg_filename, bbox_inches='tight')
     plt.savefig(images_dir / png_filename, dpi=300, bbox_inches='tight')
 
-
-# In[ ]:
-
-
-
-
diff --git a/05_classify_mutations_multimodal/plot_multimodal_results.ipynb b/05_classify_mutations_multimodal/plot_multimodal_results.ipynb