Merge pull request #84 from miltondp/rootstock-2024-07-29

[ci skip]

This build is based on
a512398.

This commit was created by the following CI build and job:
https://github.com/greenelab/phenoplier_manuscript/commit/a51239814ee92f7bb42f54169eae88cd9a8ab916/checks
https://github.com/greenelab/phenoplier_manuscript/actions/runs/10146944230

README.md

@@ -1,7 +1,7 @@
 # Output directory containing the formatted manuscript
 
 The [`gh-pages`](https://github.com/greenelab/phenoplier_manuscript/tree/gh-pages) branch hosts the contents of this directory at <https://greenelab.github.io/phenoplier_manuscript/>.
-The permalink for this webpage version is <https://greenelab.github.io/phenoplier_manuscript/v/38e9ddda238e2bc894c79948d0f01ca601a2dd95/>.
+The permalink for this webpage version is <https://greenelab.github.io/phenoplier_manuscript/v/a51239814ee92f7bb42f54169eae88cd9a8ab916/>.
 To redirect to the permalink for the latest manuscript version at anytime, use the link <https://greenelab.github.io/phenoplier_manuscript/v/freeze/>.
 
 ## Files
@@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
 ## Source
 
 The manuscripts in this directory were built from
-[`38e9ddda238e2bc894c79948d0f01ca601a2dd95`](https://github.com/greenelab/phenoplier_manuscript/commit/38e9ddda238e2bc894c79948d0f01ca601a2dd95).
+[`a51239814ee92f7bb42f54169eae88cd9a8ab916`](https://github.com/greenelab/phenoplier_manuscript/commit/a51239814ee92f7bb42f54169eae88cd9a8ab916).

index.html

@@ -69,8 +69,8 @@
   <meta name="dc.date" content="2023-09-09" />
   <meta name="citation_publication_date" content="2023-09-09" />
   <meta property="article:published_time" content="2023-09-09" />
-  <meta name="dc.modified" content="2023-09-25T17:28:52+00:00" />
-  <meta property="article:modified_time" content="2023-09-25T17:28:52+00:00" />
+  <meta name="dc.modified" content="2024-07-29T15:11:53+00:00" />
+  <meta property="article:modified_time" content="2024-07-29T15:11:53+00:00" />
   <meta name="dc.language" content="en-US" />
   <meta name="citation_language" content="en-US" />
   <meta name="dc.relation.ispartof" content="Manubot" />
@@ -145,9 +145,9 @@
   <meta name="citation_fulltext_html_url" content="https://greenelab.github.io/phenoplier_manuscript/" />
   <meta name="citation_pdf_url" content="https://greenelab.github.io/phenoplier_manuscript/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://greenelab.github.io/phenoplier_manuscript/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://greenelab.github.io/phenoplier_manuscript/v/38e9ddda238e2bc894c79948d0f01ca601a2dd95/" />
-  <meta name="manubot_html_url_versioned" content="https://greenelab.github.io/phenoplier_manuscript/v/38e9ddda238e2bc894c79948d0f01ca601a2dd95/" />
-  <meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/phenoplier_manuscript/v/38e9ddda238e2bc894c79948d0f01ca601a2dd95/manuscript.pdf" />
+  <link rel="alternate" type="text/html" href="https://greenelab.github.io/phenoplier_manuscript/v/a51239814ee92f7bb42f54169eae88cd9a8ab916/" />
+  <meta name="manubot_html_url_versioned" content="https://greenelab.github.io/phenoplier_manuscript/v/a51239814ee92f7bb42f54169eae88cd9a8ab916/" />
+  <meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/phenoplier_manuscript/v/a51239814ee92f7bb42f54169eae88cd9a8ab916/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
   <link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
@@ -173,10 +173,10 @@ <h1 class="title">Projecting genetic associations through gene expression patter
 <!-- 
 <small><em>
 This manuscript
-([permalink](https://greenelab.github.io/phenoplier_manuscript/v/38e9ddda238e2bc894c79948d0f01ca601a2dd95/))
+([permalink](https://greenelab.github.io/phenoplier_manuscript/v/a51239814ee92f7bb42f54169eae88cd9a8ab916/))
 was automatically generated
-from [greenelab/phenoplier_manuscript@38e9ddd](https://github.com/greenelab/phenoplier_manuscript/tree/38e9ddda238e2bc894c79948d0f01ca601a2dd95)
-on September 25, 2023.
+from [greenelab/phenoplier_manuscript@a512398](https://github.com/greenelab/phenoplier_manuscript/tree/a51239814ee92f7bb42f54169eae88cd9a8ab916)
+on July 29, 2024.
 </em></small> -->
 <p>Published: September 9, 2023</p>
 <h2 id="authors">Authors</h2>
@@ -1452,7 +1452,7 @@ <h2 class="page_break_before" id="references">References</h2>
 <div class="csl-left-margin">115. </div><div class="csl-right-inline">Doench, J. G. <em>et al.</em> <a href="https://doi.org/10.1038/nbt.3437">Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.</a> <em>Nat Biotechnol</em> <strong>34</strong>, 184–191 (2016).</div>
 </div>
 <div id="ref-cygmsEBt" class="csl-entry" role="doc-biblioentry">
-<div class="csl-left-margin">116. </div><div class="csl-right-inline">Pividori, M. &amp; Greene, C. <em>greenelab/phenoplier: a computational framework to integrate genetic studies with gene co-expression patterns</em>. (Zenodo, 2023). doi:<a href="https://doi.org/10.5281/zenodo.8071382">10.5281/zenodo.8071382</a>.</div>
+<div class="csl-left-margin">116. </div><div class="csl-right-inline">Milton Pividori &amp; Casey Greene. <em>Greenelab/Phenoplier: A Computational Framework to Integrate Genetic Studies with Gene Co-Expression Patterns</em>. (Zenodo, 2023). doi:<a href="https://doi.org/10.5281/zenodo.8071382">10.5281/zenodo.8071382</a>.</div>
 </div>
 <div id="ref-SiobXsoB" class="csl-entry" role="doc-biblioentry">
 <div class="csl-left-margin">117. </div><div class="csl-right-inline">Barbeira, A. N. <em>et al.</em> <a href="https://doi.org/10.1002/gepi.22346">Fine‐mapping and QTL tissue‐sharing information improves the reliability of causal gene identification</a>. <em>Genetic Epidemiology</em> <strong>44</strong>, 854–867 (2020).</div>