fixing test model function

greenelab · Aug 12, 2024 · 468ed7b · 468ed7b
1 parent 118b426
commit 468ed7b
Showing 1 changed file with 4 additions and 8 deletions.
diff --git a/tests/test_model.py b/tests/test_model.py
@@ -6,21 +6,17 @@
 def test_VAEmodel():
     n_latent = 5
     adata = synthetic_iid()
-    VAEModel.setup_anndata(adata, batch_key="batch", labels_key="labels", adata_obs="labels")
+    adata = VAEModel.use_obs(adata, labels_key="labels_key", adata_obs=["batch", "labels"])
+    adata_manager, adata = VAEModel.setup_anndata(adata, labels_key="labels_key", batch_key="batch")
 
     print("Model Initiated..")
+
     model = VAEModel(adata, n_latent=n_latent, n_layers=10)
     model.train(max_epochs=5)
-    model.get_elbo()
-    model.get_latent_representation()
-    model.get_marginal_ll(n_mc_samples=5)
-    model.get_reconstruction_error()
-    print("ELBO:", model.get_elbo())
-    print("Latent Representation:", model.get_latent_representation)
 
     # tests __repr__
     print(model)
     print("\nSuccess!..")
 
 
-test_VAEmodel()
+adata = test_VAEmodel()