Code

Ranch#316

Code

Open

jkunisak wants to merge 22 commits intogriffithlab:mastergriffithlab/GenVisR:masterfrom jkunisak:ranchjkunisak/GenVisR:ranchCopy head branch name to clipboard

+857,912-921

Commits

Commits on Oct 25, 2017

• JHK; lohSpec S4 scripts

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  bcbe070

  Copy full SHA for bcbe070

Commits on Oct 27, 2017

• lohSpec functions

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  60c7957

  Copy full SHA for 60c7957

Commits on Dec 20, 2017

• lohspec 12/19

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  5b6a7b2

  Copy full SHA for 5b6a7b2

Commits on Jan 9, 2018

• loh

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  41977fd

  Copy full SHA for 41977fd

Commits on Jan 26, 2018

• lohSpec and combined cn/loh plots

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  bfdc001

  Copy full SHA for bfdc001

• commit

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  92ad790

  Copy full SHA for 92ad790

• commit

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  99366df

  Copy full SHA for 99366df

• commit

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  1a12e33

  Copy full SHA for 1a12e33

Commits on Jan 29, 2018

• finish combined cn/loh plots

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  c0246f4

  Copy full SHA for c0246f4

• commit

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  fe92167

  Copy full SHA for fe92167

Commits on Apr 20, 2018

• Structural Variant function update

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  cb3150a

  Copy full SHA for cb3150a

Commits on Apr 24, 2018

• Structural Variant Update

  

  Jason kunisaki

  authored and

  Jason kunisaki

  committed
  401b9d2

  Copy full SHA for 401b9d2

Commits on Apr 25, 2018

• Structural variant function update - allow for DEL/DUP/INV/INS to be plotted

  

  Jason kunisaki

  authored and

  Jason kunisaki

  committed
  e8e417c

  Copy full SHA for e8e417c

Commits on Apr 30, 2018

• Structural Variant Input Parameter Checks

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  f0c0591

  Copy full SHA for f0c0591

Commits on May 1, 2018

• sv update

  

  Jason kunisaki

  authored and

  Jason kunisaki

  committed
  15c660d

  Copy full SHA for 15c660d

• sv update

  

  Jason kunisaki

  authored and

  Jason kunisaki

  committed
  8a12013

  Copy full SHA for 8a12013

• sv update

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  23c395a

  Copy full SHA for 23c395a

• sv update

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  40b4a05

  Copy full SHA for 40b4a05

• sv update

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  f0fad6b

  Copy full SHA for f0fad6b

• sv update

  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  2d7a82e

  Copy full SHA for 2d7a82e

Commits on May 2, 2018

• Update SV function, allow for Lumpy input.

  Show description for a7d06f5
  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  a7d06f5

  Copy full SHA for a7d06f5

Commits on May 4, 2018

• Update to combined cn/somatic loh/germline loh plot function. Allow for multiple samples and chromosomes to be plotted at once. Also put in constructor to check input parameters for lohSpec and com…

  Show description for d6d05f2
  

  Jason Kunisaki

  authored and

  Jason Kunisaki

  committed
  d6d05f2

  Copy full SHA for d6d05f2