Update to version 5.0.1

griffithlab · Dec 19, 2024 · c45aeb3 · c45aeb3
1 parent df71ca9
commit c45aeb3
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Showing 5 changed files with 21 additions and 3 deletions.
diff --git a/docs/conf.py b/docs/conf.py
@@ -70,7 +70,7 @@
 # The short X.Y version.
 version = '5.0'
 # The full version, including alpha/beta/rc tags.
-release = '5.0.0'
+release = '5.0.1'
 
 
 # The language for content autogenerated by Sphinx. Refer to documentation

diff --git a/docs/index.rst b/docs/index.rst
@@ -57,6 +57,15 @@ Contents
    contact
    mailing_list
 
+New in Version |release|
+------------------------
+
+This is a bugfix release. It fixes the following problem(s):
+
+- The ``--aggregate-inclusion-count-limit`` was not being passed along to the
+  aggregate report module in the pVACsplice pipeline correctly. This release
+  fixes that issue. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1167
+
 New in Version |version|
 ------------------------
 

diff --git a/docs/releases/5_0.rst b/docs/releases/5_0.rst
@@ -40,3 +40,12 @@ ________
   search if there were multiple variants or alt alleles located at the same genomic position. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1153
 - Add additional trailing amino acids for frameshift insertions when creating fasta in order to capture a
   matched wildtype entry in large repetitive regions. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1155
+
+Version 5.0.1
+-------------
+
+This is a bugfix release. It fixes the following problem(s):
+
+- The ``--aggregate-inclusion-count-limit`` was not being passed along to the
+  aggregate report module in the pVACsplice pipeline correctly. This release
+  fixes that issue. by @susannasiebert in https://github.com/griffithlab/pVACtools/pull/1167
diff --git a/pvactools/tools/pvacview/server.R b/pvactools/tools/pvacview/server.R
@@ -24,7 +24,7 @@ options(shiny.port = 3333)
 server <- shinyServer(function(input, output, session) {
   ## pVACtools version
 
-  output$version <- renderText({"pVACtools version 5.0.0"})
+  output$version <- renderText({"pVACtools version 5.0.1"})
 
   ##############################DATA UPLOAD TAB###################################
   ## helper function defined for generating shinyInputs in mainTable (Evaluation dropdown menus)

diff --git a/setup.py b/setup.py
@@ -56,7 +56,7 @@
 
 setup(
     name="pvactools",
-    version="5.0.0",
+    version="5.0.1",
     packages=[
         "pvactools.tools",
         "pvactools.tools.pvacbind",