Code

pVACview updates for paper review#1137

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Merged

susannasiebert merged 34 commits intostaginggriffithlab/pVACtools:stagingfrom pvacview_neofox_reviewsgriffithlab/pVACtools:pvacview_neofox_reviewsCopy head branch name to clipboardSep 6, 2024

+618-195

Commits

Commits on Aug 25, 2024

• added bar plots to vafs and expression. Added coloring to affinity columns

  

  Evelyn Schmidt

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Commits on Aug 26, 2024

• Use table select instead of Investigate button

  susannasiebert

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• Set button styling when loading in a new aggregate report file

  susannasiebert

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• Merge branch 'pvacview' into pvacview_neofox_reviews

  susannasiebert

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• Only show most important NeoFox columns by default

  susannasiebert

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Commits on Aug 27, 2024

• Remove unused code

  susannasiebert

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• Fix sorting of export datatable

  susannasiebert

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• Replace underscores with spaces in NeoFox table headers to reduce column widths

  susannasiebert

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• Allow evaluation of NeoFox entries

  susannasiebert

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• Remove pointer-events styling to allow deselect of NeoFox variants

  susannasiebert

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• Allow comments on Neofox variants

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• Add export tab for NeoFox

  susannasiebert

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• Fix bug with percentile re-tiering not working

  susannasiebert

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• Fire button events for evaluation every time

  susannasiebert

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Commits on Aug 28, 2024

• Fix default violin plot column selection

  susannasiebert

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• Add heatmap cell backgrounds to neofox rank columns

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• Display all comments for selected NeoFox variants and updated comment for all of them

  susannasiebert

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• Auto-select first row in pVACseq main table to match what is display on the rest of the page

  susannasiebert

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• Capture last selected row so that it still displays data from that row when a row is deselected (instead of switching back to the first row)

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Commits on Aug 29, 2024

• Update dead hyperlinks

  susannasiebert

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• Fix instruction text for custom data files

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• Fix accept button for user upload

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Commits on Sep 3, 2024

• Prevent eval button presses from firing row selection event

  susannasiebert

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• fixes to neofox dynamic scatter plot defualt variables

  

  Evelyn Schmidt

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• Merge branch 'pvacview_neofox_reviews' of github.com:griffithlab/pVACtools into pvacview_neofox_reviews

  

  Evelyn Schmidt

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• Fix issue with reference match details not loading in correctly

  susannasiebert

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Commits on Sep 4, 2024

• Add and/or update NeoFox figures

  susannasiebert

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• Update NeoFox Module text and figues in the Tutorials section of pVACview

  susannasiebert

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• Update NeoFox documentation

  susannasiebert

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• Update pVACview main module documentation and screenshots

  susannasiebert

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• Remove all styling elements for deselected evaluation buttons

  susannasiebert

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Commits on Sep 5, 2024

• Fix stray characters in documentation

  susannasiebert

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• Fix reference match screenshot in the Tutorials section of pVACview

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• Fix anchor heatmap title

  susannasiebert

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