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pre-commit test5
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tdefa committed Jun 5, 2024
1 parent 947fc49 commit ea0b6ea
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion sopa/cli/patchify.py
Original file line number Diff line number Diff line change
Expand Up @@ -132,6 +132,7 @@ def comseg(
use_prior=True,
)


@app_patchify.command()
def transcript_segmentation(
sdata_path: str = typer.Argument(help=SDATA_HELPER),
Expand Down Expand Up @@ -171,7 +172,6 @@ def transcript_segmentation(
help="Whether to use cellpose segmentation as a prior for baysor and comseg (if True, make sure to first run Cellpose or "
f"manually add the segmentation boundaries to the sdata.shapes as {SopaKeys.CELLPOSE_BOUNDARIES} key)",
),

):
"""Prepare patches for transcript-based segmentation for the different available methods (baysor, comseg)"""
from sopa._constants import SopaFiles, SopaKeys
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