Run conversion on all hdf injection files, allowing LVK injection format hdf files to be used #3240
Workflow file for this run
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| name: run generic example workflow tests | |
| on: [push, pull_request] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 60 | |
| matrix: | |
| os: [ubuntu-20.04] | |
| test-type: [simple_subworkflow_data, multilevel_subworkflow_data] | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: install condor | |
| run: | | |
| wget -qO - https://research.cs.wisc.edu/htcondor/ubuntu/HTCondor-Release.gpg.key | sudo apt-key add - | |
| echo "deb http://research.cs.wisc.edu/htcondor/ubuntu/8.9/focal focal contrib" | sudo tee -a /etc/apt/sources.list | |
| echo "deb-src http://research.cs.wisc.edu/htcondor/ubuntu/8.9/focal focal contrib" | sudo tee -a /etc/apt/sources.list | |
| sudo apt-get -o Acquire::Retries=3 update | |
| sudo apt-get -o Acquire::Retries=3 install minihtcondor | |
| sudo systemctl start condor | |
| sudo systemctl enable condor | |
| - name: install pegasus | |
| run: | | |
| wget -qO - https://download.pegasus.isi.edu/pegasus/gpg.txt | sudo apt-key add - | |
| echo "deb https://download.pegasus.isi.edu/pegasus/ubuntu bionic main" | sudo tee -a /etc/apt/sources.list | |
| sudo apt-get -o Acquire::Retries=3 update | |
| sudo apt-get -o Acquire::Retries=3 install pegasus | |
| - run: sudo apt-get -o Acquire::Retries=3 install *fftw3* intel-mkl* | |
| - name: Install pycbc | |
| run: | | |
| python -m pip install --upgrade 'pip<22.0' setuptools | |
| pip install GitPython # This shouldn't really be needed! | |
| pip install -r requirements.txt | |
| pip install . | |
| - name: running workflow | |
| run: | | |
| cd examples/workflow/generic/${{matrix.test-type}} | |
| bash -e run.sh | |
| python ../../../../examples/search/check_job.py | |
| find submitdir/work/ -type f -name '*.tar.gz' -delete | |
| - name: store log files | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: logs-${{matrix.test-type}} | |
| path: examples/workflow/generic/${{matrix.test-type}}/submitdir/work |