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@gymrek-lab

Gymrek Lab at UC San Diego

Code and docs produced by members of the Gymrek Lab at the University of California, San Diego.
README.md

The Gymrek Lab at UC San Diego

Welcome to our codebase!

Popular repositories Loading

  1. TRTools TRTools Public

    Toolkit for genome-wide analysis of tandem repeats

    Python 54 20

  2. EnsembleTR EnsembleTR Public

    Tools for merging Tandem Repeat VCF files

    Python 26 4

  3. LongTR LongTR Public

    Tandem repeat genotyping with long reads

    C++ 23

  4. webstr webstr Public

    WebSTR database and web application code

    JavaScript 7 2

  5. CAHMML CAHMML Public

    Custom Lambda HMM Library

    Python 6

  6. happler happler Public

    A haplotype-based fine-mapping method

    Jupyter Notebook 2

Repositories

Showing 10 of 12 repositories
  • TRTools Public

    Toolkit for genome-wide analysis of tandem repeats

    gymrek-lab/TRTools’s past year of commit activity
    Python 54 MIT 20 19 6 Updated Nov 8, 2024
  • webstr Public

    WebSTR database and web application code

    gymrek-lab/webstr’s past year of commit activity
    JavaScript 7 MIT 2 8 2 Updated Nov 7, 2024
  • EnsembleTR Public

    Tools for merging Tandem Repeat VCF files

    gymrek-lab/EnsembleTR’s past year of commit activity
    Python 26 4 2 2 Updated Nov 6, 2024
  • gymreklab.github.io Public

    Lab website and internal lab wiki

    gymrek-lab/gymreklab.github.io’s past year of commit activity
    HTML 0 22 1 5 Updated Nov 6, 2024
  • CITRUS Public

    Phenotype simulation tool with flexibility to model complex interactions.

    gymrek-lab/CITRUS’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 31, 2024
  • happler Public

    A haplotype-based fine-mapping method

    gymrek-lab/happler’s past year of commit activity
    Jupyter Notebook 2 MIT 0 7 1 Updated Oct 25, 2024
  • webSTR-API Public Forked from ciarareeve/webSTR-API

    WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)

    gymrek-lab/webSTR-API’s past year of commit activity
    Python 0 MIT 4 0 1 Updated Oct 23, 2024
  • core Public

    The Gymrek Lab's core python library

    gymrek-lab/core’s past year of commit activity
    Python 1 MIT 0 1 1 Updated Sep 7, 2024
  • LongTR Public

    Tandem repeat genotyping with long reads

    gymrek-lab/LongTR’s past year of commit activity
    C++ 23 GPL-2.0 0 2 0 Updated Sep 5, 2024
  • HipSTR Public

    This is a Gymrek lab version HipSTR.

    gymrek-lab/HipSTR’s past year of commit activity
    C 2 GPL-2.0 1 2 0 Updated Jun 4, 2024
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