re-work haddock3 installation #12

	---
	name: ci

	on:
	push:
	branches: [main]
	pull_request:

	jobs:
	ci:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.9", "3.10"]
	fail-fast: false

	steps:
	- uses: actions/checkout@v4

	- uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y openmpi-bin libopenmpi3 libopenmpi-dev

	- name: install test dependencies
	run: >-
	pip install coverage pytest pytest-cov hypothesis pytest-mock mypy
	fastapi==0.110.1 httpx==0.27.0 mpi4py==3.1.6

	- name: install haddock3
	run: pip install -v .

	## Disabled for now until we figure out a good configuration ##
	# - name: check types
	# run: mypy src/
	###############################################################

	- name: run tests
	run: >-
	pytest .
	--cov --cov-report=term-missing --cov-append
	--hypothesis-show-statistics

	- name: generate coverage report
	run: \|
	coverage report
	coverage xml

	- uses: codacy/codacy-coverage-reporter-action@v1
	if: >-
	${{ github.event_name != 'pull_request' \|\|
	github.event.pull_request.head.repo.full_name == github.repository }}
	with:
	project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
	coverage-reports: ./coverage.xml

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