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Protein dna docking tutorial with haddock3 (#681)
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* Create and update education/HADDOCK3/HADDOCK3-protein-DNA-basic/*
To translate protein-DNA-basic tuto from HADDOCK2 (server) to HADDOCK3
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Co-authored-by: Victor Reys <132575181+VGPReys@users.noreply.github.com>
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AnnaKravchenko committed Sep 23, 2024
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4 changes: 4 additions & 0 deletions education/HADDOCK3/index.md
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Expand Up @@ -29,3 +29,7 @@ _Note that HADDOCK3 is still in heavy development and as such the software is ev
about the hypervariable loops of the antibody and a loose definition of the epitope determined through NMR experiments.
As HADDOCK3 only exists as a command line version, this tutorial does require some basic Linux expertise.

* [**Haddock3 basic protein-DNA docking tutorial**](/education/HADDOCK3/HADDOCK3-protein-DNA-basic):
This tutorial demonstrates the use of Haddock3 for predicting the structure of a protein-DNA complex in which two protein units bind to the double-stranded DNA in a symmetrical manner (reference structure [3CRO](https://www.rcsb.org/structure/3CRO)).
In addition to provided ambiguous restraints used to drive the docking, symmetry restraints are also defined to enforce symmetrical binding to the protein.
This tutorial is using a local version of Haddock3, and therefore requires the use of a terminal and some basic command line expertise.

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