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hakyimlab / MetaXcan Public

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Update vcf file processing#124

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jelman wants to merge 5 commits intohakyimlab:masterhakyimlab/MetaXcan:masterfrom

jelman:vcf_file_updatejelman/MetaXcan:vcf_file_updateCopy head branch name to clipboard

Conversation Commits5 (5)Checks Files changed

Open

Update vcf file processing#124
jelman wants to merge 5 commits intohakyimlab:masterfrom
jelman:vcf_file_update

Commits

Commits on Apr 29, 2021

Load dosage such that 2=HOM_ALT instead of 2=UNKNOWN
jelman
authored
alts loaded as list, check length of first element
jelman
authored
Check for multiples in REFs and ALTs
jelman
authored
logging.log() requires integer level
jelman
authored
Use numpy.nanmean to allow for nans
jelman
authored

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