Replacing ij.text.TextPanel with java.io.FileWriter - #3

hansenjn · Jul 31, 2024 · a1c7ea9 · a1c7ea9
1 parent 12dc29d
commit a1c7ea9
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Showing 4 changed files with 74 additions and 8 deletions.
diff --git a/Thresholder/pom.xml b/Thresholder/pom.xml
@@ -11,7 +11,7 @@
 
  	<artifactId>MotiQ_Thresholder</artifactId>
  	<groupId>JNH</groupId>
-    <version>0.2.3-SNAPSHOT</version>
+    <version>0.2.4-SNAPSHOT</version>
 
  <!-- Plugin Information -->
  	<name>MotiQ thresholder</name>

diff --git a/Thresholder/src/main/java/motiQ_thr/OutputTextFile.java b/Thresholder/src/main/java/motiQ_thr/OutputTextFile.java
@@ -0,0 +1,67 @@
+/***===============================================================================
+ *  
+ * MotiQ_Thresholder plugin for imageJ
+ * 
+ * Copyright (C) 2015-2024 Jan N. Hansen
+ * First version: January 05, 2015
+ * This Version: July 31, 2024
+ * 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation (http://www.gnu.org/licenses/gpl.txt )
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public
+ * License along with this program.  If not, see
+ * <http://www.gnu.org/licenses/gpl-3.0.html>.
+ *   
+ * For any questions please feel free to contact me (jan.hansen@uni-bonn.de).
+ * 
+ * =============================================================================**/
+
+package motiQ_thr;
+
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+
+class OutputTextFile {
+	String path;	
+	FileWriter writer = null;
+	String output;
+
+	public OutputTextFile(String outputPath) {
+		output = "";
+		path = outputPath;		
+	}
+
+	public void append(String text) {
+		output += (text + "\n");
+	}
+
+	public boolean finish() {
+		if(output.length() == 0) return false;
+		if(path.length() == 0) return false;
+
+		output = output.replaceAll("\n$", "");
+
+		try {
+			writer = new FileWriter(new File(path));
+			writer.write(output);
+			writer.close();
+		} catch (IOException e) {
+			e.printStackTrace();
+		}
+		output = "";
+		path = "";
+		return true;
+	}
+
+	public void changePath(String newOutputPath) {
+		path = newOutputPath;
+	}
+}
diff --git a/Thresholder/src/main/java/motiQ_thr/Thresholder.java b/Thresholder/src/main/java/motiQ_thr/Thresholder.java
@@ -4,7 +4,7 @@
  * 
  * Copyright (C) 2015-2024 Jan N. Hansen
  * First version: January 05, 2015
- * This version: July 30, 2024
+ * This version: July 31, 2024
  * 
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -38,13 +38,12 @@
 import ij.process.*;
 import ij.plugin.*;
 import ij.plugin.frame.Recorder;
-import ij.text.*;
 import java.text.*;
 
 public class Thresholder implements PlugIn, Measurements{//, DialogListener {
 	//Name variables
 	final static String PLUGINNAME = "MotiQ Thresholder";
-	final static String PLUGINVERSION = "v0.2.3";
+	final static String PLUGINVERSION = "v0.2.4";
 
 	//Fonts
 	static final Font SuperHeadingFont = new Font("Sansserif", Font.BOLD, 16);
@@ -1244,7 +1243,7 @@ else if(chosenStackMethod.equals(stackMethod[4])){
 
 					//generate log file
 					SimpleDateFormat FullDateFormatter = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
-					TextPanel tw1 =new TextPanel("Results");
+					OutputTextFile tw1 = new OutputTextFile(outputPath + "_log.txt");
 					tw1.append("Output image name:	" + outputPath.substring(dir[task].length()) + ".tif");
 					tw1.append("Input image name:	" + name[task]);
 					tw1.append("Processing started: " + FullDateFormatter.format(startDate));
@@ -1312,7 +1311,7 @@ else if(chosenStackMethod.equals(stackMethod[4])){
 					if (record) {	
 						Recorder.record = false;
 					}
-					tw1.saveAs(outputPath + "_log.txt");
+					tw1.finish();
 					if (record) {	
 						Recorder.record = true;
 					}

diff --git a/Thresholder/src/main/resources/plugins.config b/Thresholder/src/main/resources/plugins.config
@@ -24,8 +24,8 @@
 # Belongs to the MotiQ toolbox for analyzing cellular morphology, dynamics, and signaling (https://github.com/hansenjn/MotiQ). MotiQ_thresholder is a automated thresholding tool for image stacks. MotiQ thresholder calculates a threshold in a separate reference image and applies it to the input image. The reference image is optionally processed by MotiQ thresholder prior to threshold calculation, whereby the image histogram used for threshold calculation can be improved.
 
 # Author: Jan N. Hansen <Jan.Hansen@uni-bonn.de>
-# Version: 0.2.3
+# Version: 0.2.4
 # Date: 2017/09/15
 # Requires: ImageJ
 
-Plugins>MotiQ, "MotiQ Thresholder (v0.2.3)", motiQ_thr.Thresholder
+Plugins>MotiQ, "MotiQ Thresholder (v0.2.4)", motiQ_thr.Thresholder