modify --pwd arg in b0volume fmap creation

harvard-nrg · Jun 26, 2024 · 7c0dc13 · 7c0dc13
1 parent d5bc5a4
commit 7c0dc13
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/dwiqc/tasks/prequal.py b/dwiqc/tasks/prequal.py
@@ -134,7 +134,7 @@ def truncate_fmaps(self, fmap_files, inputs_dir):
 			cmd = [
 				'singularity',
 				'exec',
-				'--pwd', fmap_dir,
+				'--pwd', inputs_dir,
 				self._fsl_sif,
 				'/APPS/fsl/bin/fslselectvols',
 				'-i', fmap_basename,