add logging

dwiqc/__version__.py

@@ -1,6 +1,6 @@
 __title__ = 'dwiqc'
 __description__ = 'Quality Assurance Pipeline for Diffusion MR Data'
 __url__ = 'https://github.com/harvard-nrg/dwiqc'
-__version__ = '1.6.7'
+__version__ = '1.6.8'
 __author__ = 'Neuroinformatics Research Group'
 __author_email__ = 'info@neuroinfo.org'

dwiqc/tasks/qsiprep.py

@@ -361,10 +361,13 @@ def execute_fmap_truncation(self):
 		if self._truncate_fmap:
 			fmap_files = self._layout.get(subject=self._sub, session=self._ses, suffix='epi', extension='.nii.gz', return_type='filename')
 
+			logger.info(f'running truncation on {fmap_files}')
+
 			for fmap in fmap_files:
 				shape = nib.load(fmap).get_fdata().shape
 				if len(shape) == 4:
 					num_vols = shape[3]
+					logger.info(f'{fmap} has {num_vols} volumes')
 					if num_vols == 1:
 						continue
 					middle_vol = num_vols // 2