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@harvardinformatics

Harvard Informatics

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  1. learning-bioinformatics-at-home learning-bioinformatics-at-home Public

    resources for learning bioinformatics

    858 155

  2. JAuth JAuth Public

    Java GUI client to generate Google authentication codes

    Java 200 50

  3. bioinformatics-coffee-hour bioinformatics-coffee-hour Public

    Short lessons from FAS Informatics coffee hour

    HTML 143 48

  4. ATAC-seq ATAC-seq Public

    Python 122 39

  5. snpArcher snpArcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    Python 73 33

  6. GenomeAnnotation GenomeAnnotation Public

    Best practices and workflow for genome annotation

    Python 73 13

Repositories

Showing 10 of 168 repositories
  • ifxvue Public

    Harvard FAS Informatics Vue JS components

    harvardinformatics/ifxvue’s past year of commit activity
    Vue 0 GPL-2.0 0 0 9 Updated Jan 3, 2025
  • ifxurls Public

    Tools for getting urls in the ifx environment

    harvardinformatics/ifxurls’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Dec 30, 2024
  • scrub-jay-genomics Public
    harvardinformatics/scrub-jay-genomics’s past year of commit activity
    HTML 4 MIT 0 4 0 Updated Dec 20, 2024
  • specify_web Public

    Conversion of HUH specify_web application to git

    harvardinformatics/specify_web’s past year of commit activity
    PHP 3 0 0 0 Updated Dec 17, 2024
  • GenomeAnnotation Public

    Best practices and workflow for genome annotation

    harvardinformatics/GenomeAnnotation’s past year of commit activity
    Python 73 13 1 0 Updated Dec 11, 2024
  • AnnotationRNAseqAssembly Public

    Snakemake workflow for assembling transcript models from RNA-seq reads

    harvardinformatics/AnnotationRNAseqAssembly’s past year of commit activity
    Python 1 0 0 0 Updated Dec 10, 2024
  • informatics-website Public

    FAS Informatics website

    harvardinformatics/informatics-website’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Dec 10, 2024
  • cactus-snakemake Public

    guidelines for running progressive CACTUS to produce a whole genome alignment required for genome annotation tools that leverage WGA

    harvardinformatics/cactus-snakemake’s past year of commit activity
    Python 3 1 0 0 Updated Dec 4, 2024
  • benchmarking Public

    Demo repo for basic benchmarking

    harvardinformatics/benchmarking’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 2, 2024
  • snpArcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    harvardinformatics/snpArcher’s past year of commit activity
    Python 73 MIT 33 19 2 Updated Nov 25, 2024
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