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Update model categories in docs
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mattwoodx committed Jan 24, 2025
1 parent de61d98 commit bb45b08
Showing 1 changed file with 15 additions and 14 deletions.
29 changes: 15 additions & 14 deletions mkdocs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -4,17 +4,7 @@ repo_url: https://github.com/helicalAI/helical
repo_name: helicalAI/helical
copyright: <a href="https://www.helical-ai.com/">Helical Team</a> <br> Copyright &copy; 2024
nav:
- RNA Models:
- Helix-mRNA:
- Model Card: ./model_cards/helix_mrna.md
- Config: ./configs/helix_mrna_config.md
- Model: ./models/helix_mrna.md
- Fine-Tuning Model: ./fine_tuning_models/helix_mrna_fine_tune.md
- Mamba2-mRNA:
- Model Card: ./model_cards/mamba2_mrna.md
- Config: ./configs/mamba2_mrna_config.md
- Model: ./models/mamba2_mrna.md
- Fine-Tuning Model: ./fine_tuning_models/mamba2_mrna_fine_tune.md
- Single-Cell Models:
- Geneformer:
- Model Card: ./model_cards/geneformer.md
- Config: ./configs/geneformer_config.md
Expand All @@ -30,7 +20,18 @@ nav:
- Config: ./configs/uce_config.md
- Model: ./models/uce.md
- Fine-Tuning Model: ./fine_tuning_models/uce_fine_tune.md
- DNA Models:
- RNA Sequence Models:
- Helix-mRNA:
- Model Card: ./model_cards/helix_mrna.md
- Config: ./configs/helix_mrna_config.md
- Model: ./models/helix_mrna.md
- Fine-Tuning Model: ./fine_tuning_models/helix_mrna_fine_tune.md
- Mamba2-mRNA:
- Model Card: ./model_cards/mamba2_mrna.md
- Config: ./configs/mamba2_mrna_config.md
- Model: ./models/mamba2_mrna.md
- Fine-Tuning Model: ./fine_tuning_models/mamba2_mrna_fine_tune.md
- DNA Sequence Models:
- HyenaDNA:
- Model Card: ./model_cards/hyenadna.md
- Config: ./configs/hyenadna_config.md
Expand All @@ -41,8 +42,8 @@ nav:
- Config: ./configs/caduceus_config.md
- Model: ./models/caduceus.md
- Fine-Tuning Model: ./fine_tuning_models/caduceus_fine_tune.md
- Helical Base Models: ./models/base_models.md
- Fine-Tuning Heads: ./models/fine_tuning_heads.md
- Helical Base Models: ./models/base_models.md
- Fine-Tuning Heads: ./models/fine_tuning_heads.md
- Example Notebooks:
- Quick-Start-Tutorial: ./notebooks/Quick-Start-Tutorial.ipynb
- Helix-mRNA: ./notebooks/Helix-mRNA.ipynb
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