adding notebooks

hiruna72 · Feb 6, 2024 · 4e36a01 · 4e36a01
1 parent 206f682
commit 4e36a01
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diff --git a/.gitignore b/.gitignore
@@ -6,6 +6,7 @@ output
 *egg*
 dist
 __pycache__
+*/.ipynb_checkpoints/*
 idealg_v
 build
 venv3

diff --git a/notebooks/squig_stats.ipynb b/notebooks/squig_stats.ipynb
diff --git a/test/data/raw/metric/eventalign.tsv b/test/data/raw/metric/eventalign.tsv
diff --git a/test/data/raw/metric/nanopolish.tsv b/test/data/raw/metric/nanopolish.tsv
diff --git a/test/data/raw/metric/realign.tsv b/test/data/raw/metric/realign.tsv
diff --git a/test/data/raw/metric/sigfish.tsv b/test/data/raw/metric/sigfish.tsv
diff --git a/test/data/raw/metric/squigualator.tsv b/test/data/raw/metric/squigualator.tsv
@@ -0,0 +1 @@
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,56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54	65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47	69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73	60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39	55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17	56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54	65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47	69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73	60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39	55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17	55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31	61.08,61.08,61.08,61.08,61.08,61.08,61.08,61.08,61.08,61.08	66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43	66.57,66.57,66.57,66.57,66.57,66.57,66.57,66.57,66.57,66.57	56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68
-Original file line number
+Diff line change
@@ Expand Up / @@ -6,6 +6,7 @@ output @@
     *egg*
     dist
     __pycache__
+    */.ipynb_checkpoints/*
     idealg_v
     build
     venv3
@@ Expand Down @@
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		nan nan nan nan nan nan 110.39,110.39,110.39,110.39,110.39,110.39,110.39,110.39,110.39,110.39 103.39,103.39,103.39,103.39,103.39,103.39,103.39,103.39,103.39,103.39 79.21,79.21,79.21,79.21,79.21,79.21,79.21,79.21,79.21,79.21 71.24,71.24,71.24,71.24,71.24,71.24,71.24,71.24,71.24,71.24 143.5,143.5,143.5,143.5,143.5,143.5,143.5,143.5,143.5,143.5 110.67,110.67,110.67,110.67,110.67,110.67,110.67,110.67,110.67,110.67 62.45,62.45,62.45,62.45,62.45,62.45,62.45,62.45,62.45,62.45 73.99,73.99,73.99,73.99,73.99,73.99,73.99,73.99,73.99,73.99 111.77,111.77,111.77,111.77,111.77,111.77,111.77,111.77,111.77,111.77 93.77,93.77,93.77,93.77,93.77,93.77,93.77,93.77,93.77,93.77 67.67,67.67,67.67,67.67,67.67,67.67,67.67,67.67,67.67,67.67 60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39 109.02,109.02,109.02,109.02,109.02,109.02,109.02,109.02,109.02,109.02 77.97,77.97,77.97,77.97,77.97,77.97,77.97,77.97,77.97,77.97 124.82,124.82,124.82,124.82,124.82,124.82,124.82,124.82,124.82,124.82 103.53,103.53,103.53,103.53,103.53,103.53,103.53,103.53,103.53,103.53 74.4,74.4,74.4,74.4,74.4,74.4,74.4,74.4,74.4,74.4 96.93,96.93,96.93,96.93,96.93,96.93,96.93,96.93,96.93,96.93 90.61,90.61,90.61,90.61,90.61,90.61,90.61,90.61,90.61,90.61 75.23,75.23,75.23,75.23,75.23,75.23,75.23,75.23,75.23,75.23 101.88,101.88,101.88,101.88,101.88,101.88,101.88,101.88,101.88,101.88 126.33,126.33,126.33,126.33,126.33,126.33,126.33,126.33,126.33,126.33 114.24,114.24,114.24,114.24,114.24,114.24,114.24,114.24,114.24,114.24 101.05,101.05,101.05,101.05,101.05,101.05,101.05,101.05,101.05,101.05 75.78,75.78,75.78,75.78,75.78,75.78,75.78,75.78,75.78,75.78 97.21,97.21,97.21,97.21,97.21,97.21,97.21,97.21,97.21,97.21 124.82,124.82,124.82,124.82,124.82,124.82,124.82,124.82,124.82,124.82 112.59,112.59,112.59,112.59,112.59,112.59,112.59,112.59,112.59,112.59 88.96,88.96,88.96,88.96,88.96,88.96,88.96,88.96,88.96,88.96 73.17,73.17,73.17,73.17,73.17,73.17,73.17,73.17,73.17,73.17 66.85,66.85,66.85,66.85,66.85,66.85,66.85,66.85,66.85,66.85 126.88,126.88,126.88,126.88,126.88,126.88,126.88,126.88,126.88,126.88 104.49,104.49,104.49,104.49,104.49,104.49,104.49,104.49,104.49,104.49 122.48,122.48,122.48,122.48,122.48,122.48,122.48,122.48,122.48,122.48 107.51,107.51,107.51,107.51,107.51,107.51,107.51,107.51,107.51,107.51 71.52,71.52,71.52,71.52,71.52,71.52,71.52,71.52,71.52,71.52 100.37,100.37,100.37,100.37,100.37,100.37,100.37,100.37,100.37,100.37 70.01,70.01,70.01,70.01,70.01,70.01,70.01,70.01,70.01,70.01 66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43 123.17,123.17,123.17,123.17,123.17,123.17,123.17,123.17,123.17,123.17 84.57,84.57,84.57,84.57,84.57,84.57,84.57,84.57,84.57,84.57 65.88,65.88,65.88,65.88,65.88,65.88,65.88,65.88,65.88,65.88 71.93,71.93,71.93,71.93,71.93,71.93,71.93,71.93,71.93,71.93 72.89,72.89,72.89,72.89,72.89,72.89,72.89,72.89,72.89,72.89 102.15,102.15,102.15,102.15,102.15,102.15,102.15,102.15,102.15,102.15 73.3,73.3,73.3,73.3,73.3,73.3,73.3,73.3,73.3,73.3 64.37,64.37,64.37,64.37,64.37,64.37,64.37,64.37,64.37,64.37 73.3,73.3,73.3,73.3,73.3,73.3,73.3,73.3,73.3,73.3 72.48,72.48,72.48,72.48,72.48,72.48,72.48,72.48,72.48,72.48 116.99,116.99,116.99,116.99,116.99,116.99,116.99,116.99,116.99,116.99 120.7,120.7,120.7,120.7,120.7,120.7,120.7,120.7,120.7,120.7 110.53,110.53,110.53,110.53,110.53,110.53,110.53,110.53,110.53,110.53 89.38,89.38,89.38,89.38,89.38,89.38,89.38,89.38,89.38,89.38 84.57,84.57,84.57,84.57,84.57,84.57,84.57,84.57,84.57,84.57 126.05,126.05,126.05,126.05,126.05,126.05,126.05,126.05,126.05,126.05 108.47,108.47,108.47,108.47,108.47,108.47,108.47,108.47,108.47,108.47 126.33,126.33,126.33,126.33,126.33,126.33,126.33,126.33,126.33,126.33 106.27,106.27,106.27,106.27,106.27,106.27,106.27,106.27,106.27,106.27 69.32,69.32,69.32,69.32,69.32,69.32,69.32,69.32,69.32,69.32 56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68 59.02,59.02,59.02,59.02,59.02,59.02,59.02,59.02,59.02,59.02 62.45,62.45,62.45,62.45,62.45,62.45,62.45,62.45,62.45,62.45 61.35,61.35,61.35,61.35,61.35,61.35,61.35,61.35,61.35,61.35 57.92,57.92,57.92,57.92,57.92,57.92,57.92,57.92,57.92,57.92 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21,54.21 55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31 59.15,59.15,59.15,59.15,59.15,59.15,59.15,59.15,59.15,59.15 62.59,62.59,62.59,62.59,62.59,62.59,62.59,62.59,62.59,62.59 56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68 55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17 56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54 65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47 69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73 60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39 55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17 56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54,56.54 65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47,65.47 69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73,69.73 60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39,60.39 55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17,55.17 55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31,55.31 61.08,61.08,61.08,61.08,61.08,61.08,61.08,61.08,61.08,61.08 66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43,66.43 66.57,66.57,66.57,66.57,66.57,66.57,66.57,66.57,66.57,66.57 56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68,56.68