This organization is meant to collect histopathology related repos.
See starred repos here: https://github.com/stars/sbalci/lists/histopathology-image-analysis
See a similar list here: https://docs.google.com/spreadsheets/d/102RnHX-v-wm50rMtUn6vXWDF-L-Gsf9gEjtbe2cYjLs/edit?pli=1#gid=0
Forked from zhaoxuanma/Deeplearning-digital-pathology
Full package for applying deep learning to virtual slides.
Python 1
Forked from mahdihosseini/FQPath
No-Reference Focus Quality Assessment of Digital Pathology Images [IEEE TMI 2019]
MATLAB 1
Forked from ksugar/qupath-extension-sam
QuPath extension for Segment Anything Model (SAM)
Java 1
Forked from miccaiif/OpenAL
Official PyTorch Code of our MICCAI2023 paper OpenAL
Forked from tovaroe/WSI_histology
MATLAB functionality for working with whole slide images of histological slide scans
MATLAB 1
Forked from SBU-BMI/wsinfer
🔥🚀 Blazingly fast pipeline for patch-based classification in whole slide images
Python 1
Lab for quantitative bioimage analysis experiments in Python
A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
List of academic institutes/companies working on computer-based digital pathology image analysis
QuPath extension for Segment Anything Model (SAM)
A python based GUI to annotate images and save annotations as COCO style JSON format.
