Snakemake workflow for virome quantitation in Metformin treated T2D patients using assembled metagenomes.
PRJNA361402 [1] data was analysed separately, 40 T2D patients from Spain.
PRJEB1786 gut metagenome in European women with normal, impaired and diabetic glucose control data [2] and [3]. Faecal metagenome of 53 T2D patients and 43 subjects with normal glucose tolerance (NGT) from Sweden. All study participants were female. 70-year-old women were included if they had T2D, IGT or NGT. Exclusion criteria were chronic inflammatory disease and treatment with antibiotics during the preceding 3 months. An average of 3.1 +/- 1.8 Gb of PE reads for each sample.
PRJEB5224 data [4] gut microbiome of 75 T2D patients from Denmark.
Snakemake workflow for virome quantitation using assembled metagenomes.