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hoelzer-lab

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  1. rnaflow rnaflow Public

    A simple RNA-Seq differential gene expression pipeline using Nextflow

    HTML 94 20

  2. ribap ribap Public

    A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs

    HTML 25 4

  3. hypro hypro Public

    Extend hypothetical prokka protein annotations using additional homology searches against larger databases

    Python 9

  4. pcago pcago Public

    Forked from rnajena/pcago-unified

    PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read c…

    R 4 2

  5. treat treat Public

    A nextflow pipeline for the evaluation de novo transcriptome assemblies: TranscRiptome EvaluATion (TREAT).

    Nextflow 2

  6. nf_template nf_template Public

    A simple template for Nextflow.

    Nextflow 1 1

Repositories

Showing 10 of 11 repositories
  • ribap Public

    A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs

    hoelzer-lab/ribap’s past year of commit activity
    HTML 25 GPL-3.0 4 8 0 Updated Oct 23, 2024
  • hoelzer-lab.github.io Public

    Hoelzer Bioinformatics Lab.

    hoelzer-lab/hoelzer-lab.github.io’s past year of commit activity
    SCSS 0 0 0 0 Updated Mar 3, 2024
  • rnaflow Public

    A simple RNA-Seq differential gene expression pipeline using Nextflow

    hoelzer-lab/rnaflow’s past year of commit activity
    HTML 94 GPL-3.0 20 47 1 Updated Feb 26, 2024
  • hypro Public

    Extend hypothetical prokka protein annotations using additional homology searches against larger databases

    hoelzer-lab/hypro’s past year of commit activity
    Python 9 GPL-3.0 0 2 0 Updated Oct 22, 2021
  • paper_A27 Public

    SARS-CoV-2 A.27 high-quality images

    hoelzer-lab/paper_A27’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated May 14, 2021
  • president Public

    PaiRwisE Sequence IDENtiTy. Calculate pairwise nucleotide identity with respect to a reference sequence.

    hoelzer-lab/president’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 17, 2021
  • pocp Public Forked from hoelzer/pocp

    Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014

    hoelzer-lab/pocp’s past year of commit activity
    Ruby 0 GPL-3.0 5 0 0 Updated Jan 6, 2021
  • nf_template Public

    A simple template for Nextflow.

    hoelzer-lab/nf_template’s past year of commit activity
    Nextflow 1 GPL-3.0 1 0 0 Updated Feb 18, 2020
  • treat Public

    A nextflow pipeline for the evaluation de novo transcriptome assemblies: TranscRiptome EvaluATion (TREAT).

    hoelzer-lab/treat’s past year of commit activity
    Nextflow 2 GPL-3.0 0 5 0 Updated Feb 15, 2020
  • pcago Public Forked from rnajena/pcago-unified

    PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.

    hoelzer-lab/pcago’s past year of commit activity
    R 4 3 0 0 Updated Nov 10, 2019
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