Sync develop to stable #289
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* Fix cache flush (#226) * Fix a thread race issue that may cause memory error when larger than cache max size data is transferred * Add a test that writes more data than server cache size * Fix CI run command * Fix restart issue * Update nersc.yml (#238) * Since PDCinit returns a uint64_t, 0 should indicate failure (#233) Co-authored-by: Jean Luca Bez <jlbez@lbl.gov> * Check the return value of `PDC_Client_init` in `PDC_init` (#230) * Check that return value of PDC_Client_init in PDC_init * Change return to 0 This will make is simpler when merging #233 (comment) --------- Co-authored-by: Jean Luca Bez <jlbez@lbl.gov> * Change `printf` to PDC logger (#232) * Changed all printf to use pdc logger Also removed large blocks of comments and chanegd the pdc logger to print the file name, function, and line number. * Change typo of LOG_INFO to LOG_ERROR * Correct grammar from fail -> failed * update grammer succesfully close -> successfully closed * switch type of LOG_INFO to LOG_ERROR * Add logging docs and fix some LOG_INFO->LOG_JUST_PRINT * update clang formatting --------- Co-authored-by: Jean Luca Bez <jlbez@lbl.gov> * Malloc correct size for pdc_obj_metadata_pkg (#237) Co-authored-by: Jean Luca Bez <jlbez@lbl.gov> * PDCregion_transfer_create validate client buf, local region, and remote regions (#236) Co-authored-by: Jean Luca Bez <jlbez@lbl.gov> --------- Co-authored-by: Jean Luca Bez <jlbez@lbl.gov> Co-authored-by: Noah Lewis <47840925+TheAssembler1@users.noreply.github.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* Fix cache flush (#226) * Fix a thread race issue that may cause memory error when larger than cache max size data is transferred * Add a test that writes more data than server cache size * Fix CI run command * checkpoint * Switch variables such as count_0, start_0, and size0... to arrays This will reduce code duplication, reduce bugs, and make it easier to switch to support n-dimnesional data. * clang format * checkpoint * created better function names and documentation * remove * Committing clang-format changes * clang format * remove file * change for use helper function * fix bug with incorrect helper function call --------- Co-authored-by: Houjun Tang <htang4@lbl.gov> Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* Fix issues with PDC tools * Correct LOG_ERROR to LOG_INFO * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
Print new line by default in `PGOTO_ERROR` and `PGOTO_ERROR_VOID` Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* Fix cache flush (#226) * Fix a thread race issue that may cause memory error when larger than cache max size data is transferred * Add a test that writes more data than server cache size * Fix CI run command * Grouped commons tests into folders This commit also changes the src/tests/CmakeLists.txt to build tests within their new folders * add deprecated folder remove buf_map folder * Update run_multiple_mpi_test.sh * Update dependencies-macos.sh * Update dependencies-macos.sh --------- Co-authored-by: Houjun Tang <htang4@lbl.gov> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov> Co-authored-by: Jean Luca Bez <jeanlucabez@gmail.com>
…254) * Return the same obj_id if the obj is just created or already opened * Committing clang-format changes * Update doc * Update dependencies-macos.sh --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* add option to connect to a given network interface * Committing clang-format changes * fix conflict * include header * enable output on failure --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
* fix multhreading compilation * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
…icate object name (#262) * Validate sucess of PDC_obj_create and PDC_find_id in PDCobj_create_mpi * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* checkpoint * replace free with PDC_free and calloc with PDC_calloc * Committing clang-format changes * fix more mallocs to PDC_malloc * more PDC_free fixes * Committing clang-format changes * Update ubuntu-cache.yml * remove eno1 * fix realloc * Committing clang-format changes * Update ubuntu-no-cache.yaml * Fix several bugs with error checking with object dim allocation * Committing clang-format changes * fix bug * Committing clang-format changes * Update ubuntu-no-cache.yaml * Update ubuntu-cache.yml * Set default value of ndim to 1 in PDCprop_create when using PDC_OBJ_CREATE * Committing clang-format changes * Malloc when defaulting to ndim size 1. Only free hostname when we PDC_malloc the memory because pointers returned by getenv are not malloced and could point to static memory. * Committing clang-format changes * Update README.md minor change to trigger the pipeline --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov> Co-authored-by: Jean Luca Bez <jeanlucabez@gmail.com>
* Fix all sphinx warnings and errors. Removed repeat declarations of functions. * Committing clang-format changes * remove def of EXTENSION_MAPPING * gitignore for docs and fix c structs * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* Replace docs/README.md -> steps to build docs * Update README.md --------- Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* use func enter and func leave in all functions * Committing clang-format changes * fix infinite recursion between memory managment, hash table, and per function timing * Committing clang-format changes * add profiling to CI --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* checkpoint * Committing clang-format changes * some tests * Committing clang-format changes * checkpoint * open_obj uses new test macros * Committing clang-format changes * read_obj uses TASSERT * read_obj uses TASSERT * Committing clang-format changes * cont_del and cont_getid use test macros * convert more tests to use macros * convert more tests to macros * Committing clang-format changes * Committing clang-format changes * clang format * use test helper in cont_info and cont_add_del * more tests use macros * Committing clang-format changes * use tests macros in more tests * use PGOTO* macros instead of goto * clang format * more log fixes * logging cleanup and more usage of test macros * Committing clang-format changes * clang format and fix CMakeLists for tests * use tests macros in transfer overlap 2D/3D * use TASSERT in more tests * Committing clang-format changes * use test asserts * all tests on the CI use TASSERT * fix printing and newlines in tests * print time, file name, function name, and line number in debug print --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
* Fixed logging typos * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* all but 4 close errors are fixed * Committing clang-format changes * client side HG_Finalize now passes on serial tests * Committing clang-format changes * cleanup * Committing clang-format changes * Update pdc_region_transfer.c * free bulk handles during region transfer close --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
* cleanup finding id's * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
* Fix seg fault for PDCobj_open on non-existent object * Committing clang-format changes * Remove log from NULL check * Log message when object metadata isn't found. --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* move hash table mutex to hashtable source filse * Committing clang-format changes * add multithread compile test --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
* check for NULL paramterse in hash table * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
jeanbez
added
type: documentation
TheAssembler1
approved these changes
Sep 16, 2025
houjun
approved these changes
Sep 16, 2025
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Description
Sync the latest features and bug fixes into stable.