README.md

Last updated on 1/6/2025.

All input fastq files should be located inside the structure ./fastq/{samplename}/*.fastq.gz

A. For ES modeling code

1. Run code snippets in Prerequisite-for-ES-modeling.run-once.md .
2. Run code snippets in Code-for-ES-modeling.md . B. For DE modeling code
3. Run code snippets in Prerequisite-for-DE-modeling.run-once.md .
4. Run code snippets in Code-for-DE-modeling.md .