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1. single-cell-genetics/vireo single-cell-genetics/vireo Public

   Demultiplexing pooled scRNA-seq data with or without genotype reference

   Python 77 27

2. single-cell-genetics/cardelino single-cell-genetics/cardelino Public

   Clone identification from single-cell data

   R 59 12

3. brie brie Public

   BRIE: Bayesian Regression for Isoform Estimate in Single Cells

   Python 41 15

4. briekit briekit Public

   Preprocessing tool kit of BRIE project in splicing analysis

   Python 2 2

5. diceseq diceseq Public

   Dynamic Isoform spliCing Estimator via sequencing data

   Python 2 1

6. single-cell-genetics/cellSNP single-cell-genetics/cellSNP Public

   Pileup biallelic SNPs from single-cell and bulk RNA-seq data

   Python 76 11