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briekit with ensembl gtf #7

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TdzBAS opened this issue Apr 14, 2023 · 1 comment

TdzBAS commented Apr 14, 2023

HI,

thanks for this nice tool.
When I dont use Gencode gtf, I encounter errors.
for GRCh38.p13 from ensembl I get following error:

I already added chr as a prefix for the chromosome column, but still the same error.

Any suggestions?

Owner

huangyh09 commented Apr 17, 2023

Can you check that both your GTF and FASTA files have the same format of chromosome IDs, e.g., chrX (not X)? Also, it only supports Python 2.

Yuanhua

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