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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 6

Repositories

Showing 10 of 181 repositories
  • search-python-sdk Public

    Python SDK to access HuBMAP Search API

    hubmapconsortium/search-python-sdk’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Apr 10, 2025
  • entity-python-sdk Public

    Python SDK to access HuBMAP Entity API

    hubmapconsortium/entity-python-sdk’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Apr 10, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 3 83 9 Updated Apr 9, 2025
  • hra-workflows-runner Public

    hra-workflows-runner: Pipeline to download, annotate, and summarize experimental data using hra-workflows

    hubmapconsortium/hra-workflows-runner’s past year of commit activity
    JavaScript 0 MIT 0 9 1 Updated Apr 9, 2025
  • ingest-api Public

    HuBMAP Data Ingest API

    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 17 0 Updated Apr 9, 2025
  • search-api Public

    HuBMAP search service and associated pieces to create an index

    hubmapconsortium/search-api’s past year of commit activity
    Python 2 MIT 2 18 1 Updated Apr 9, 2025
  • rna-data-products Public
    hubmapconsortium/rna-data-products’s past year of commit activity
    Python 0 GPL-3.0 0 7 0 Updated Apr 9, 2025
  • hra-kg Public

    HRA-KG: Human Reference Atlas Knowledge Graph

    hubmapconsortium/hra-kg’s past year of commit activity
    Mermaid 3 MIT 1 6 2 Updated Apr 9, 2025
  • documentation Public

    General Documentation For HuBMAP

    hubmapconsortium/documentation’s past year of commit activity
    JavaScript 0 1 5 1 Updated Apr 9, 2025
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui’s past year of commit activity
    JavaScript 4 MIT 0 100 (1 issue needs help) 0 Updated Apr 9, 2025
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