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Kai Hu committed Aug 1, 2022
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Expand Up @@ -288,13 +288,13 @@ Results are stored [here](https://github.com/hukai916/scATACpipe_example/tree/ma
2. Command used for `chromap` option:
```
nextflow run main.nf -c conf/test_default_plant.config -profile singularity,lsf
nextflow run main.nf -c conf/test_chromap_plant.config -profile singularity,lsf
```
Results are stored [here](https://github.com/hukai916/scATACpipe_example/tree/main/test_plant_chromap).
3. Command used for `10xgenomics` option:
```
nextflow run main.nf -c conf/test_default_plant.config -profile singularity,lsf
nextflow run main.nf -c conf/test_10xgenomics_plant.config -profile singularity,lsf
```
Results are stored [here](https://github.com/hukai916/scATACpipe_example/tree/main/test_plant_10xgenomics).
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