Stars
Your Personal Assistant in Computational Bioimaging.
An interactive explorer for single-cell transcriptomics data
RTG Tools: Utilities for accurate VCF comparison and manipulation
A template repository for python programs that use a CLI.
Shiny apps for NGS etc based on reusable components created using Shiny modules
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Platform to build admin panels, internal tools, and dashboards. Integrates with 25+ databases and any API.
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Wiki.js | A modern and powerful wiki app built on Node.js
A platform to create documentation/wiki content built with PHP & Laravel
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
Transcript assembly and quantification for RNA-Seq
RNA-seq analysis pipeline for detection of gene-fusions
nf-core / pgdb
Forked from bigbio/pgdbThe ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
supervenn: precise and easy-to-read multiple sets visualization in Python
NBIS workshop in Neural Nets and Deep Learning
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Free and open source laravel eCommerce platform
Methods and analysis for Garcia-Nieto, et al. Somatic mutations
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
NumPy aware dynamic Python compiler using LLVM