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Your Personal Assistant in Computational Bioimaging.

Jupyter Notebook 38 10 Updated Nov 14, 2024

An interactive explorer for single-cell transcriptomics data

JavaScript 654 127 Updated Dec 7, 2024

RTG Tools: Utilities for accurate VCF comparison and manipulation

Java 306 49 Updated May 28, 2024

A template repository for python programs that use a CLI.

Shell 2 Updated Oct 29, 2020

Shiny apps for NGS etc based on reusable components created using Shiny modules

HTML 74 21 Updated Jan 16, 2025

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

Python 232 36 Updated Oct 9, 2024

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

C++ 568 89 Updated Dec 21, 2024

Platform to build admin panels, internal tools, and dashboards. Integrates with 25+ databases and any API.

TypeScript 35,289 3,820 Updated Jan 21, 2025

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Python 994 353 Updated Aug 24, 2024
Python 4,354 454 Updated Jul 25, 2024

Wiki.js | A modern and powerful wiki app built on Node.js

Vue 25,432 2,816 Updated Jan 1, 2025

A platform to create documentation/wiki content built with PHP & Laravel

PHP 15,838 1,983 Updated Jan 18, 2025

Nextflow training material

Nextflow 136 136 Updated Jan 21, 2025

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)

Python 138 26 Updated Apr 12, 2023

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Python 42 17 Updated Jan 18, 2023

Transcript assembly and quantification for RNA-Seq

C++ 400 78 Updated Jan 7, 2025

RNA-seq analysis pipeline for detection of gene-fusions

Nextflow 149 99 Updated Jan 21, 2025

The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.

Nextflow 6 8 Updated Jan 13, 2025

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 965 716 Updated Jan 20, 2025

supervenn: precise and easy-to-read multiple sets visualization in Python

Python 334 23 Updated Nov 9, 2024

NBIS workshop in Neural Nets and Deep Learning

HTML 18 9 Updated May 23, 2024

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Nextflow 416 421 Updated Jan 20, 2025

Free and open source laravel eCommerce platform

PHP 16,269 2,290 Updated Jan 21, 2025

Methods and analysis for Garcia-Nieto, et al. Somatic mutations

R 15 12 Updated Jan 5, 2020

Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

Python 101 39 Updated Nov 5, 2020

NumPy aware dynamic Python compiler using LLVM

Python 10,140 1,139 Updated Jan 16, 2025
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