bugfixes

iAMB-RWTH-Aachen · Dec 16, 2024 · ae93e6b · ae93e6b
1 parent 219f3b6
commit ae93e6b
Show file tree

Hide file tree

Showing 16 changed files with 1 addition and 5 deletions.
diff --git a/docs/docs/PAM_setup_guide.md → docs/PAM_setup_guide.md b/docs/docs/PAM_setup_guide.md → docs/PAM_setup_guide.md
diff --git a/docs/docs/PAModelpy_UML.svg → docs/PAModelpy_UML.svg b/docs/docs/PAModelpy_UML.svg → docs/PAModelpy_UML.svg
diff --git a/docs/docs/api.rst → docs/api.rst b/docs/docs/api.rst → docs/api.rst
diff --git a/docs/docs/api_reference/CatalyticEvent.md → docs/api_reference/CatalyticEvent.md b/docs/docs/api_reference/CatalyticEvent.md → docs/api_reference/CatalyticEvent.md
diff --git a/docs/docs/api_reference/Constraints.md → docs/api_reference/Constraints.md b/docs/docs/api_reference/Constraints.md → docs/api_reference/Constraints.md
diff --git a/docs/docs/api_reference/Enzyme.md → docs/api_reference/Enzyme.md b/docs/docs/api_reference/Enzyme.md → docs/api_reference/Enzyme.md
diff --git a/docs/docs/api_reference/EnzymeSectors.md → docs/api_reference/EnzymeSectors.md b/docs/docs/api_reference/EnzymeSectors.md → docs/api_reference/EnzymeSectors.md
diff --git a/docs/docs/api_reference/PAMValidator.md → docs/api_reference/PAMValidator.md b/docs/docs/api_reference/PAMValidator.md → docs/api_reference/PAMValidator.md
diff --git a/docs/docs/api_reference/PAModel.md → docs/api_reference/PAModel.md b/docs/docs/api_reference/PAModel.md → docs/api_reference/PAModel.md
diff --git a/docs/docs/api_reference/_category_.json → docs/api_reference/_category_.json b/docs/docs/api_reference/_category_.json → docs/api_reference/_category_.json
diff --git a/docs/docs/api_reference/configuration.md → docs/api_reference/configuration.md b/docs/docs/api_reference/configuration.md → docs/api_reference/configuration.md
diff --git a/docs/docs/api_reference/sidebar.json → docs/api_reference/sidebar.json b/docs/docs/api_reference/sidebar.json → docs/api_reference/sidebar.json
diff --git a/docs/conf.py b/docs/conf.py
@@ -1,7 +1,3 @@
-# Configuration file for the Sphinx documentation builder.
-import os
-import sys
-sys.path.insert(0, os.path.abspath('../docs/docs'))  # Adjust the path to where your documentation files are
 
 # Set the source directory for your Sphinx documentation files
 source_suffix = ['.rst', '.md']  # If using Markdown files with MyST

diff --git a/docs/docs/example.md → docs/example.md b/docs/docs/example.md → docs/example.md
@@ -238,7 +238,7 @@ sensitivities can help us explain concepts of protein allocation.
 
 <figure id="toy_model_image">
 
-![toy_model_image](./assets/toy-model.png)
+![toy_model_image](assetsoy-model.png)
 
 <figcaption>**Figure 1. Toy model network and parameters**  
 *This toy model represents a schematic overview of a microbial metabolism,

diff --git a/docs/docs/index.rst → docs/index.rst b/docs/docs/index.rst → docs/index.rst
diff --git a/docs/docs/introduction.md → docs/introduction.md b/docs/docs/introduction.md → docs/introduction.md