updates to resolve bugs in pamparametrizer

iAMB-RWTH-Aachen · Dec 17, 2024 · cc98495 · cc98495
1 parent b11611a
commit cc98495
Show file tree

Hide file tree

Showing 5 changed files with 3 additions and 29 deletions.
diff --git a/Data/proteinAllocationModel_iML1515_EnzymaticData_py_uniprot.xlsx b/Data/proteinAllocationModel_iML1515_EnzymaticData_py_uniprot.xlsx
diff --git a/docs/.gitignore b/docs/.gitignore
diff --git a/docs/api_reference/CatalyticEvent.md b/docs/api_reference/CatalyticEvent.md
@@ -1,7 +1,4 @@
----
-sidebar_label: CatalyticEvent
-title: CatalyticEvent
----
+# CatalyticEvent
 
 CatalyticEvent object which relates Reaction variables to the EnzymeVariable and Enzyme objects.
 It contains multiple functions which enable easy mapping and handling of one Event of catalysis

diff --git a/docs/docs/assets/toy-model.png → docs/assets/toy-model.png b/docs/docs/assets/toy-model.png → docs/assets/toy-model.png
diff --git a/src/PAModelpy/EnzymeSectors.py b/src/PAModelpy/EnzymeSectors.py
@@ -157,8 +157,8 @@ def add(self, model):
                     reaction = model.reactions.query(rxn_id)
                     for rxn in reaction:
                         rxn2protein[rxn.id] = enzymes
-
-                        del rxn2protein[rxn_id]
+                        if rxn_id in rxn2protein.keys():
+                            del rxn2protein[rxn_id]
                 except:
                     print(model.reactions.query(rxn_id))
                     warn(