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@idekerlab

UC, San Diego Trey Ideker Lab

Bioinformatics software projects developed by UCSD Trey Ideker lab

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  1. DCell DCell Public

    DCell browser and gene deletion simulator

    JavaScript 121 34

  2. hiview hiview Public

    HiView: the universal viewer for hierarchical data

    JavaScript 16 7

  3. vizbi-2015 vizbi-2015 Public

    Sample data and notebooks for VIZBI 2015 tutorial session

    5 12

  4. Network_Evaluation_Tools Network_Evaluation_Tools Public

    Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

    Jupyter Notebook 32 19

  5. pyNBS pyNBS Public

    Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

    Jupyter Notebook 38 22

Repositories

Showing 10 of 175 repositories
  • cellmaps_vnn Public
    idekerlab/cellmaps_vnn’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 26, 2024
  • cellmaps_pipeline Public
    idekerlab/cellmaps_pipeline’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Dec 26, 2024
  • example_service_apps Public
    idekerlab/example_service_apps’s past year of commit activity
    Python 0 0 0 0 Updated Dec 24, 2024
  • cansrmapp Public
    idekerlab/cansrmapp’s past year of commit activity
    Python 0 0 0 0 Updated Dec 20, 2024
  • cellmaps_coembedding Public
    idekerlab/cellmaps_coembedding’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Dec 18, 2024
  • cellmaps_ppidownloader Public
    idekerlab/cellmaps_ppidownloader’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Dec 18, 2024
  • llm_evaluation_for_gene_set_interpretation Public

    Code space for 'Evaluation of large language models for discovery of gene set function'

    idekerlab/llm_evaluation_for_gene_set_interpretation’s past year of commit activity
    Jupyter Notebook 25 MIT 4 1 0 Updated Dec 17, 2024
  • cellmaps_annotate_hierarchy Public
    idekerlab/cellmaps_annotate_hierarchy’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 17, 2024
  • cellmaps_utils Public
    idekerlab/cellmaps_utils’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Dec 13, 2024
  • G2PT Public
    idekerlab/G2PT’s past year of commit activity
    Python 7 1 1 0 Updated Dec 13, 2024
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