working version that also computes cross-terms #260
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| name: Pytest | |
| on: | |
| [push, pull_request] | |
| env: | |
| SETUP_XVFB: True # avoid issues if mpl tries to open a GUI window | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| # the whole CI pipeline will be skipped if [ci skip] is in the commit msg | |
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| # mpi: ['openmpi'] | |
| # mpi: [ 'mpich', 'openmpi', 'intelmpi'] | |
| # env: | |
| # OMP_NUM_THREADS: 1 | |
| # MKL_NUM_THREADS: 1 | |
| # OPENBLAS_NUM_THREADS: 1 | |
| # NUMEXPR_NUM_THREADS: 1 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@master | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # - name: Setup MPI | |
| # uses: mpi4py/setup-mpi@v1 | |
| # with: | |
| # mpi: ${{ matrix.mpi }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get -y install libbz2-dev | |
| python -m pip install --upgrade pip | |
| pip install wheel flake8 pytest pytest-cov coveralls | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| # # TODO: the section below can be removed if the compile step is fixed otherwise | |
| - name: Reinstall fitsio to ensure the numpy version during compilation matches the one at runtime | |
| run: | | |
| pip uninstall fitsio -y | |
| pip cache purge | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Install lya_2pt | |
| run: pip install -e . | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=100 --statistics | |
| - name: Test with pytest and gen report | |
| timeout-minutes: 30 | |
| run: | | |
| export NUMBA_DISABLE_JIT=1 | |
| pytest --cov=./ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: true | |
| flags: unittests | |
| verbose: true |