update examples

igvteam · Feb 8, 2024 · 2eecde7 · 2eecde7
1 parent a1aaaa7
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Showing 15 changed files with 15 additions and 17 deletions.
diff --git a/docs/examples/example_ann.html b/docs/examples/example_ann.html
diff --git a/docs/examples/example_bed.html b/docs/examples/example_bed.html
diff --git a/docs/examples/example_bedpe.html b/docs/examples/example_bedpe.html
diff --git a/docs/examples/example_config.html b/docs/examples/example_config.html
diff --git a/docs/examples/example_dups.html b/docs/examples/example_dups.html
diff --git a/docs/examples/example_fusions.html b/docs/examples/example_fusions.html
diff --git a/docs/examples/example_genome.html b/docs/examples/example_genome.html
diff --git a/docs/examples/example_idlink.html b/docs/examples/example_idlink.html
diff --git a/docs/examples/example_junctions.html b/docs/examples/example_junctions.html
diff --git a/docs/examples/example_maf.html b/docs/examples/example_maf.html
diff --git a/docs/examples/example_noembed.html b/docs/examples/example_noembed.html
@@ -169,7 +169,7 @@
         var igvDiv
 
         igvDiv = document.getElementById("igvDiv")
-        var options = {"reference": {"fastaURL": "https://igv-genepattern-org.s3.amazonaws.com/genomes/seq/hg38/hg38.fa", "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/genomes/seq/hg38/hg38.fa.fai", "cytobandURL": "https://s3.amazonaws.com/igv.org.genomes/hg38/annotations/cytoBandIdeo.txt.gz"}, "tracks": [{"name": "Refseq Genes", "format": "refgene", "url": "https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/ncbiRefSeq.txt.gz", "indexed": false, "removable": false, "order": 1000000, "infoURL": "https://www.ncbi.nlm.nih.gov/gene/?term=$$", "type": "annotation"}, {"name": "variants.vcf", "url": "https://igv-genepattern-org.s3.amazonaws.com/test/reports/variants.vcf.gz", "type": "variant", "format": "vcf", "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/test/reports/variants.vcf.gz.tbi"}, {"name": "recalibrated", "url": "https://igv-genepattern-org.s3.amazonaws.com/test/reports/recalibrated.bam", "type": "alignment", "format": "bam", "height": 500, "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/test/reports/recalibrated.bam.bai"}]}
+        var options = {"reference": {"fastaURL": "https://igv-genepattern-org.s3.amazonaws.com/genomes/seq/hg38/hg38.fa", "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/genomes/seq/hg38/hg38.fa.fai", "cytobandURL": "https://igv-genepattern-org.s3.amazonaws.com/genomes/hg38/cytoBandIdeo.txt.gz"}, "tracks": [{"name": "Refseq Genes", "format": "refgene", "url": "https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/ncbiRefSeq.txt.gz", "indexed": false, "removable": false, "order": 1000001, "infoURL": "https://www.ncbi.nlm.nih.gov/gene/?term=$$", "type": "annotation"}, {"name": "variants.vcf", "url": "https://igv-genepattern-org.s3.amazonaws.com/test/reports/variants.vcf.gz", "type": "variant", "format": "vcf", "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/test/reports/variants.vcf.gz.tbi"}, {"name": "recalibrated", "url": "https://igv-genepattern-org.s3.amazonaws.com/test/reports/recalibrated.bam", "type": "alignment", "format": "bam", "height": 500, "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/test/reports/recalibrated.bam.bai"}]}
 
         igv.createBrowser(igvDiv, options)
             .then(function (b) {

diff --git a/docs/examples/example_tab.html b/docs/examples/example_tab.html
diff --git a/docs/examples/example_vcf.html b/docs/examples/example_vcf.html
diff --git a/docs/examples/example_wig.html b/docs/examples/example_wig.html
diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 
 setuptools.setup(name='igv-reports',
                  packages=['igv_reports'],
-                 version='1.10.0',
+                 version='1.12.0',
                  description='Creates self-contained html pages for visual variant review with IGV (igv.js).',
                  long_description=long_description,
                  long_description_content_type="text/markdown",