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@ikmb

Institute of Clinical Molecular Biology

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  1. MAGScoT MAGScoT Public

    MAGScoT - a MAG scoring and refinement tool

    R 32 2

  2. eagleimp eagleimp Public

    C++ 25 4

  3. amino_acid_encoding_deep_learning_applications amino_acid_encoding_deep_learning_applications Public

    The repository contains all the code for the paper amino acid encoding using deep learning application

    Python 19 5

  4. vcf2prot vcf2prot Public

    Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).

    Rust 15 1

  5. TOFU-MAaPO TOFU-MAaPO Public

    Nextflow pipeline for the analysis of metagenomic short reads.

    Nextflow 12 5

  6. gwas-assoc gwas-assoc Public

    The IKMB GWAS Association Testing Pipeline

    Python 9 1

Repositories

Showing 10 of 67 repositories
  • eagleimp Public
    ikmb/eagleimp’s past year of commit activity
    C++ 25 GPL-3.0 4 1 0 Updated Mar 12, 2025
  • ikmb/nfdi4microbiota_kmc_microbiome_workshop’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Mar 12, 2025
  • hybridgwais Public

    Fast epistasis screening software using hardware accelerators (incl. FPGA and GPU)

    ikmb/hybridgwais’s past year of commit activity
    C++ 3 GPL-3.0 1 0 0 Updated Mar 11, 2025
  • ngs-qc Public

    QC tools for new sequencing runs (FastQC, FastQ Screen, MultiQC Report)

    ikmb/ngs-qc’s past year of commit activity
    Nextflow 0 GPL-3.0 1 0 0 Updated Mar 10, 2025
  • TOFUpaper Public
    ikmb/TOFUpaper’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 27, 2025
  • TOFU-MAaPO Public

    Nextflow pipeline for the analysis of metagenomic short reads.

    ikmb/TOFU-MAaPO’s past year of commit activity
    Nextflow 12 GPL-3.0 5 0 1 Updated Feb 26, 2025
  • phewas-assoc Public

    The IKMB Association Testing Pipeline for PheWAS

    ikmb/phewas-assoc’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Feb 14, 2025
  • MAGScoT Public

    MAGScoT - a MAG scoring and refinement tool

    ikmb/MAGScoT’s past year of commit activity
    R 32 GPL-3.0 2 2 0 Updated Oct 10, 2024
  • ikmb/MMmicrobiomeLab’s past year of commit activity
    0 1 0 0 Updated Aug 19, 2024
  • hybridgwais-fpga Public

    FPGA design files for HybridGWAIS

    ikmb/hybridgwais-fpga’s past year of commit activity
    VHDL 0 GPL-3.0 0 0 0 Updated Aug 6, 2024

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