Cloud Ilastik

APIs for running ilastik workflows in a cloud

License:	GPLv3

Settings

Moved to settings.

Basic Commands

Setting Up Developement Environment

• To setup a dev environment, use this command

  $ make setup_dev

This will create superuser ilastik:ilastik

To enable HBP login run following command:

$ python manage.py register_hbp_client <client_id> <client_secret>

Setting Up Your Users

• To create a normal user account, just go to Sign Up and fill out the form. Once you submit it, you'll see a "Verify Your E-mail Address" page. Go to your console to see a simulated email verification message. Copy the link into your browser. Now the user's email should be verified and ready to go.

• To create an superuser account, use this command:

  $ python manage.py createsuperuser
  

For convenience, you can keep your normal user logged in on Chrome and your superuser logged in on Firefox (or similar), so that you can see how the site behaves for both kinds of users.

Type checks

Running type checks with mypy:

$ mypy cloud_ilastik

Test coverage

To run the tests, check your test coverage, and generate an HTML coverage report:

$ coverage run -m pytest
$ coverage html
$ open htmlcov/index.html

Running tests with py.test

$ pytest

Live reloading and Sass CSS compilation

Moved to Live reloading and SASS compilation.

Celery

This app comes with Celery.

To run a celery worker:

cd cloud_ilastik
celery -A config.celery_app worker -l info

Please note: For Celery's import magic to work, it is important where the celery commands are run. If you are in the same folder with manage.py, you should be right.

Deployment

The following details how to deploy this application.