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add data download hints to 04_06 and 04_07
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iliapopov17 committed Sep 29, 2024
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2 changes: 1 addition & 1 deletion docs/IV. Phylogenetics/04_06_Phylogenomics.md
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Expand Up @@ -39,7 +39,7 @@ Archive: 04_06_Phylogenomics.zip
inflating: scripts/draw_tree_icons.R
inflating: scripts/draw_tree_photos.R
inflating: scripts/one_gene_tree.sh
inflating: scripts/write_family_names.R
inflating: scripts/write_family_names.R
```

## **Introduction**
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21 changes: 21 additions & 0 deletions docs/IV. Phylogenetics/04_07_Visualization_Pro.md
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Expand Up @@ -18,6 +18,27 @@ It is divided into 2 parts:<br>
![CLT](https://img.shields.io/badge/Language-R-steelblue)<br>
![IDE](https://img.shields.io/badge/Recommended IDE-RStudio-steelblue)

???+ question
In this chapter we will use a lot of prewritten scripts and even some images for visualization. Where to get them?

Download it from GitHub repository:

```bash
wget https://github.com/iliapopov17/NGS-Handbook/raw/refs/heads/main/data/04_Phylogenetics/04_07_Visualization_Pro.zip
```

```bash
unzip 04_07_Visualization_Pro.zip && rm -rf 04_07_Visualization_Pro.zip
```

These are the scripts and images we will be working with:

```
Archive: 04_07_Visualization_Pro.zip
creating: data/
inflating: data/metadata.csv
inflating: data/vhsv.fasta
```
----------------------------------------------

## **Part 1: Making the tree**
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